[Home] | [Total List]

[175116_at]

Description AV187762 /REP_DB=TREMBL Accession /GB=AV187762 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk515f1 : 5prime end, single read.
Cluster 6grp_total > 80      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 3.5
(0.9)
A 		3
(-0)
A 		1.3
(-3)
A 		4.7
(3)
A 		3
B 3.2
(0.3)
A 		3.1
(0.1)
A 		1.7
(-3)
A 		4.4
(3)
A 		3
C 1.6
(-3)
A 		2.4
(-2.9)
A 		1.3
(-3)
A 		111.1
(3)
A 		110
avr 2.8
(-2.8) 		2.8
(-2.8) 		1.4
(-3) 		40.1
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 2.9
(-2.9)
A 		10.4
(-1.7)
A 		2.6
(-3)
A 		37.5
(3)
A 		3.8
(-2.8)
A 		4.2
(-2.7)
A 		35
B 1.9
(-2.3)
A 		1.6
(-2.5)
A 		2.2
(-2.1)
A 		10.6
(3)
A 		1.6
(-2.5)
A 		0.8
(-3)
A 		10
C 1.5
(-2.7)
A 		3.8
(-0.5)
A 		1.7
(-2.5)
A 		7.5
(3)
A 		2.3
(-2)
A 		1.2
(-3)
A 		6
avr 2.1
(-3) 		5.3
(-1.8) 		2.2
(-3) 		18.5
(3) 		2.6
(-2.8) 		2.1
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.3
(3)
A 		0.6
(-1.2)
A 		0.3
(-3)
A 		0.7
(-0.6)
A 		1
B 1
(3)
A 		0.8
(1)
A 		0.4
(-3)
A 		0.9
(2)
A 		1
C 0.5
(-3)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		18.7
(3)
A 		18
avr 0.9
(-2.5) 		0.7
(-2.7) 		0.4
(-3) 		6.8
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.5
(-3)
A 		3.7
(-0.9)
A 		0.6
(-2.9)
A 		9.5
(3)
A 		1.1
(-2.6)
A 		1
(-2.7)
A 		9
B 0.7
(-2)
A 		0.5
(-2.5)
A 		0.5
(-2.5)
A 		2.8
(3)
A 		0.6
(-2.3)
A 		0.3
(-3)
A 		3
C 0.5
(-2.5)
A 		1.1
(0.8)
A 		0.4
(-3)
A 		1.5
(3)
A 		0.7
(-1.4)
A 		0.4
(-3)
A 		1
avr 0.6
(-2.9) 		1.8
(-1.1) 		0.5
(-3) 		4.6
(3) 		0.8
(-2.6) 		0.6
(-2.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175116_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21830
Sequence Type Exemplar sequence
Representative Public ID AV187762 NCBI
Target Description AV187762 /REP_DB=TREMBL Accession /GB=AV187762 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk515f1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028684(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028684 NCBI Caenorhabditis elegans F26D2.3b (F26D2.3) mRNA, complete cds. 11/11 None
F26D2.3b ENSEMBL cdna:known chromosome:CEL140:V:16410546:16411136:1 gene:F26D2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180103 2 1 NM_001028683 179474_at (9)
NM_001028684 175116_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16410847-16411126(+) 100.0 100.0
Public Domain and Genome References
Ensembl F26D2.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE54922 Hypothetical protein F26D2.3b [Caenorhabditis elegans] ref|NP_001023855.1| F26D2.3b [Caenorhabditis elegans] 8.0E-58
blast CAB04185 Hypothetical protein F26D2.3a [Caenorhabditis elegans] ref|NP_001023854.1| F26D2.3a [Caenorhabditis elegans] 6.0E-48
blast CAA18374 Hypothetical protein ZK1225.2 [Caenorhabditis elegans] ref|NP_493314.1| ZK1225.2 [Caenorhabditis elegans] 3.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023855.1 1 7-29
F26D2.3b 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:175116_AT
gaggggataaggttggcagccgacatcttactggtttttattttatttgttacttagacg
tctgaaactgagaatttaccccataacttacgctcaagggtctcgccacgccgacaacgg
gttactgtaacggttttatttatatttatattcatggactcgacacgatatacagtttaa
aaaactaaacgtggcaagattagacgtttacgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGGGATAAGGTTGGCAGCCGACA 241 403 18 Antisense
AAGGTTGGCAGCCGACATCTTACTG 39 159 26 Antisense
GCCGACATCTTACTGGTTTTTATTT 83 285 36 Antisense
ATTTTATTTGTTACTTAGACGTCTG 476 13 57 Antisense
GTTACTTAGACGTCTGAAACTGAGA 362 443 66 Antisense
GAAACTGAGAATTTACCCCATAACT 275 357 81 Antisense
TTTACCCCATAACTTACGCTCAAGG 280 673 92 Antisense
CATAACTTACGCTCAAGGGTCTCGC 125 193 99 Antisense
ATTTATATTCATGGACTCGACACGA 496 15 161 Antisense
GACTCGACACGATATACAGTTTAAA 185 375 174 Antisense
GTGGCAAGATTAGACGTTTACGTAA 92 489 208 Antisense
Sequence Source Affymetrix Proprietary Database