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[175115_at]

Description AV201849 /REP_DB=TREMBL Accession /GB=AV201849 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk542d4 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 33      4grp_high_8_8 > 46      6grp_highest_nonorm > 43      6grp_total > 30      4grp_total > 49      6grp_highest_sub > 04      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2066
1 2 3 4 range
A 57.2
(-3)
P 		2013.9
(3)
P 		1856.1
(2.5)
P 		167
(-2.7)
P 		1957
B 73.9
(-3)
P 		2063.8
(2.9)
P 		2098.3
(3)
P 		82
(-3)
P 		2024
C 36.7
(-3)
M 		2102.4
(3)
P 		1750.2
(2)
P 		184.9
(-2.6)
P 		2066
avr 55.9
(-3) 		2060
(3) 		1901.5
(2.5) 		144.6
(-2.7) 		2004

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2031
1 2 3 4 5 6 range
A 719.1
(-1.5)
P 		2235.6
(3)
P 		1622.9
(1.2)
P 		1871.8
(1.9)
P 		976.8
(-0.8)
P 		226.9
(-3)
P 		2009
B 547.4
(-2.1)
P 		1921.4
(3)
P 		1326.6
(0.8)
P 		1701.3
(2.2)
P 		1018.3
(-0.3)
P 		296.5
(-3)
P 		1625
C 511
(-1.9)
P 		1829.2
(3)
P 		1255.5
(0.9)
P 		1655.4
(2.4)
P 		887.2
(-0.5)
P 		204.7
(-3)
P 		1625
avr 592.5
(-1.8) 		1995.4
(3) 		1401.7
(1) 		1742.8
(2.1) 		960.8
(-0.5) 		242.7
(-3) 		1753
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 598
1 2 3 4 range
A 20.8
(-3)
P 		437.2
(2.4)
P 		485.2
(3)
P 		24.4
(-3)
P 		464
B 23.6
(-2.9)
P 		509.7
(3)
P 		486.2
(2.7)
P 		17.5
(-3)
P 		492
C 12.2
(-3)
M 		604.5
(2.9)
P 		610
(3)
P 		31.2
(-2.8)
P 		598
avr 18.9
(-3) 		517.1
(2.9) 		527.1
(3) 		24.4
(-2.9) 		508

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 740
1 2 3 4 5 6 range
A 132.6
(-2.4)
P 		795.1
(3)
P 		353.4
(-0.6)
P 		474.7
(0.4)
P 		294.8
(-1.1)
P 		55.3
(-3)
P 		740
B 190.5
(-2.1)
P 		639.6
(3)
P 		322.1
(-0.6)
P 		450.6
(0.9)
P 		413.7
(0.4)
P 		110.6
(-3)
P 		529
C 189.4
(-1.5)
P 		558.1
(3)
P 		319.5
(0.1)
P 		332.9
(0.2)
P 		287.1
(-0.3)
P 		68.5
(-3)
P 		490
avr 170.8
(-2.1) 		664.3
(3) 		331.7
(-0.4) 		419.4
(0.5) 		331.9
(-0.4) 		78.1
(-3) 		586
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175115_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22206
Sequence Type Exemplar sequence
Representative Public ID AV201849 NCBI
Target Description AV201849 /REP_DB=TREMBL Accession /GB=AV201849 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk542d4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076457(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076457 NCBI Caenorhabditis elegans Y64H9A.2 (Y64H9A.2) mRNA, complete cds. 11/11 None
Y64H9A.2 ENSEMBL cdna:known chromosome:CEL140:X:5043977:5044646:1 gene:Y64H9A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012841 8/11 Cross Hyb Matching Probes None
GENEFINDER00000012842 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5044078-5044637(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y64H9A.2
Entrez Gene 180777 Entrez gene
SwissProt Q95Y56 EMBL-EBI
WormBase CE29132 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL00871 Hypothetical protein Y64H9A.2 [Caenorhabditis elegans] ref|NP_508858.1| Y64H9A.2 [Caenorhabditis elegans] 6.0E-56
blast CAE68685 Hypothetical protein CBG14597 [Caenorhabditis briggsae] 9.0E-52
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508858.1 1 5-22
Y64H9A.2 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:175115_AT
ggattatgtcgttgcgcactatatcaattgccgtcgtttttattatcacagcccttctag
tttcggtttccgaagctagatttaaacgacaaacatatcaatatgacccttacctcatgt
catttgctcatccacatccgggaacaaaagttcaacaaggatatctagctagatatgctc
cacaagattggccaaaatggtactcacgaaacatgatgaagtggacaggagaatcgcgat
tctcgccgtacgacaaaactgatgccagatatccaaattggcataatgagtttgccaaca
gaagagtgtaaaatgaaataatcattatctccatctacatgccatctcttaatttatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTATGTCGTTGCGCACTATATC 196 509 13 Antisense
GCGCACTATATCAATTGCCGTCGTT 597 287 26 Antisense
GCCGTCGTTTTTATTATCACAGCCC 38 283 42 Antisense
TTATTATCACAGCCCTTCTAGTTTC 566 679 52 Antisense
ATCAATATGACCCTTACCTCATGTC 702 25 109 Antisense
TTACCTCATGTCATTTGCTCATCCA 263 683 122 Antisense
TTGCTCATCCACATCCGGGAACAAA 687 703 136 Antisense
GATATGCTCCACAAGATTGGCCAAA 398 425 184 Antisense
CGATTCTCGCCGTACGACAAAACTG 409 247 249 Antisense
ATCATTATCTCCATCTACATGCCAT 321 31 333 Antisense
TCTACATGCCATCTCTTAATTTATT 51 613 346 Antisense
Sequence Source Affymetrix Proprietary Database