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[175114_s_at]

Description AV203136 /REP_DB=TREMBL Accession /GB=AV203136 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk559d9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 41      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 33      6grp_total > 31      4grp_total > 61      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1213
1 2 3 4 range
A 1941
(2.8)
P 		1721.8
(1.7)
P 		1975.8
(3)
P 		767.2
(-3)
P 		1209
B 1816.5
(2.5)
P 		1543.1
(1.1)
P 		1917.7
(3)
P 		762.8
(-3)
P 		1155
C 1918.4
(3)
P 		1423.4
(0.3)
P 		1745.3
(2.1)
P 		798.4
(-3)
P 		1120
avr 1892
(3) 		1562.8
(1.2) 		1879.6
(2.9) 		776.1
(-3) 		1116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1887
1 2 3 4 5 6 range
A 1393.6
(0.3)
P 		1661.3
(1.3)
P 		2090.2
(3)
P 		1940.8
(2.4)
P 		780.7
(-2.1)
P 		547.6
(-3)
P 		1543
B 1280.8
(-0.2)
P 		1577.3
(1)
P 		2039
(3)
P 		1288.5
(-0.2)
P 		962.3
(-1.6)
P 		629.5
(-3)
P 		1410
C 1425.5
(-0.1)
P 		1710.8
(0.8)
P 		2401.6
(3)
P 		1376.1
(-0.3)
P 		946.6
(-1.6)
P 		514.4
(-3)
P 		1887
avr 1366.6
(-0) 		1649.8
(1) 		2176.9
(3) 		1535.1
(0.6) 		896.5
(-1.8) 		563.8
(-3) 		1613
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 594
1 2 3 4 range
A 706.7
(3)
P 		373.7
(-0.4)
P 		516.5
(1.1)
P 		112.3
(-3)
P 		594
B 579.3
(3)
P 		381.1
(0.1)
P 		444.4
(1.1)
P 		162.6
(-3)
P 		417
C 635.1
(3)
P 		409.2
(0.3)
P 		608.3
(2.7)
P 		134.6
(-3)
P 		501
avr 640.4
(3) 		388
(-0) 		523.1
(1.6) 		136.5
(-3) 		504

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 256.9
(-1.4)
P 		590.9
(3)
P 		455.2
(1.2)
P 		492.2
(1.7)
P 		235.6
(-1.7)
P 		133.3
(-3)
P 		458
B 445.7
(1.4)
P 		525
(3)
P 		495.1
(2.4)
P 		341.3
(-0.8)
P 		391
(0.2)
P 		234.8
(-3)
P 		290
C 528.4
(1.9)
P 		522
(1.8)
P 		611.2
(3)
P 		276.7
(-1.6)
P 		306.3
(-1.2)
P 		172.2
(-3)
P 		439
avr 410.3
(0.8) 		546
(3) 		520.5
(2.6) 		370.1
(0.1) 		311
(-0.9) 		180.1
(-3) 		366
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175114_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21770
Sequence Type Exemplar sequence
Representative Public ID AV203136 NCBI
Target Description AV203136 /REP_DB=TREMBL Accession /GB=AV203136 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk559d9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072032 NCBI Caenorhabditis elegans F08F3.4 (F08F3.4) mRNA, complete cds. 11/11 None
SNAP00000026680 ENSEMBL cdna:SNAP chromosome:CEL140:V:5411103:5414816:1 11/11 None
GENEFINDER00000026689 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5410926:5414816:1 11/11 None
F08F3.4 ENSEMBL cdna:known chromosome:CEL140:V:5410849:5412763:1 gene:F08F3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5411518-5412719(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08F3.4
Entrez Gene 178924 Entrez gene
SwissProt Q22945 EMBL-EBI
WormBase CE32856 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588874_AT similar to L-threonine dehydrogenase cfa
CANINE_2:CFA.10407.1.S1_AT similar to L-threonine dehydrogenase cfa
CANINE_2:CFAAFFX.12836.1.S1_S_AT similar to L-threonine dehydrogenase cfa
CANINE_2:CFAAFFX.12848.1.S1_AT similar to L-threonine dehydrogenase cfa
DROSOPHILA_2:1625052_AT dm
DROSGENOME1:152732_AT dm
CHICKEN:GGA.12856.1.S1_AT similar to L-threonine dehydrogenase; L-threonine 3-dehydrogenase gga
MG-U74CV2:168873_I_AT L-threonine dehydrogenase mm
MG-U74CV2:168613_AT L-threonine dehydrogenase mm
MOE430A:1449064_AT L-threonine dehydrogenase mm
MOUSE430A_2:1449064_AT L-threonine dehydrogenase mm
MOUSE430_2:1449064_AT L-threonine dehydrogenase mm
MOUSE430_2:1445734_AT L-threonine 3-dehydrogenase (Tdh) mm
MOE430B:1445734_AT L-threonine 3-dehydrogenase (Tdh) mm
MG-U74BV2:163050_R_AT L-threonine 3-dehydrogenase (Tdh) mm
MU19KSUBA:TC18140_AT L-threonine 3-dehydrogenase (Tdh) mm
MU19KSUBC:TC37661_AT L-threonine 3-dehydrogenase (Tdh) mm
RG-U34B:RC_AI013458_AT L-threonine dehydrogenase (predicted) rn
RAE230A:1371303_AT L-threonine dehydrogenase (predicted) rn
RAT230_2:1371303_AT L-threonine dehydrogenase (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAN84827 Hypothetical protein F08F3.4 [Caenorhabditis elegans] ref|NP_504433.2| F08F3.4 [Caenorhabditis elegans] 0.0
blast T29433 hypothetical protein F08F3.4 - Caenorhabditis elegans 0.0
blast CAE64632 Hypothetical protein CBG09393 [Caenorhabditis briggsae] 0.0
blast CAE64632 Hypothetical protein CBG09393 [Caenorhabditis briggsae] 1.0E-178
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000026680 3 297-319,354-376,386-408
GENEFINDER00000026689 3 405-427,462-484,494-516
Sequence
Target Sequence 
>C. ELEGANS:175114_S_AT
attcccgggtattatctcagcgacaaagccaggtggtggaactactgactacgcaatcca
aattttctacgacgctcttcaaaaaggcaagcacacctgctaccttcgaccagacacacg
tcttccaatgatgtacgacactgattgtatggcttcagtcattcaacttttggctgctga
cagtcaatcattgaagaggcgaacatacaatgtaacgggattctcattcacaccagagga
aattgctgatgcaattcgaagagtgatgccaggtttcgagattgattacgatatctgtcc
aacaaggcagtctattgccgattcatggcctatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCCGGGTATTATCTCAGCGACA 342 9 135 Antisense
CTCAGCGACAAAGCCAGGTGGTGGA 369 227 150 Antisense
GGTGGTGGAACTACTGACTACGCAA 444 499 166 Antisense
AATCCAAATTTTCTACGACGCTCTT 240 161 189 Antisense
AAAAGGCAAGCACACCTGCTACCTT 569 131 216 Antisense
GACCAGACACACGTCTTCCAATGAT 518 383 242 Antisense
GTACGACACTGATTGTATGGCTTCA 181 457 267 Antisense
GGCTTCAGTCATTCAACTTTTGGCT 50 539 285 Antisense
GGGATTCTCATTCACACCAGAGGAA 430 495 351 Antisense
GAGTGATGCCAGGTTTCGAGATTGA 210 401 395 Antisense
GTCTATTGCCGATTCATGGCCTATG 7 469 444 Antisense
Sequence Source Affymetrix Proprietary Database