[Home] | [Total List]

[175113_at]

Description AV203636 /REP_DB=TREMBL Accession /GB=AV203636 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk579b1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 39      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 90      6grp_total > 29      4grp_total > 13      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 450
1 2 3 4 range
A 243.2
(-0.3)
P 		95.4
(-2.9)
P 		88.7
(-3)
P 		435.2
(3)
P 		347
B 225.1
(-1.1)
P 		80.8
(-3)
P 		85.3
(-2.9)
P 		531.1
(3)
P 		450
C 313.4
(0.5)
P 		116.6
(-2.6)
P 		93
(-3)
P 		470.2
(3)
P 		377
avr 260.6
(-0.4) 		97.6
(-2.9) 		89
(-3) 		478.8
(3) 		390

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 114.5
(1)
P 		130.3
(3)
P 		81.7
(-3)
P 		103.7
(-0.3)
P 		102.6
(-0.4)
P 		129.1
(2.9)
P 		49
B 128.1
(0.8)
P 		91.6
(-3)
P 		133.6
(1.4)
P 		111.5
(-0.9)
P 		148.5
(3)
P 		108.6
(-1.2)
P 		57
C 174.8
(3)
P 		120.2
(-0.8)
P 		88.6
(-3)
P 		100.5
(-2.2)
P 		129
(-0.2)
P 		107.1
(-1.7)
P 		86
avr 139.1
(3) 		114
(-1) 		101.3
(-3) 		105.2
(-2.4) 		126.7
(1) 		114.9
(-0.8) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 88.5
(3)
P 		20.7
(-3)
P 		23.2
(-2.8)
P 		63.7
(0.8)
P 		68
B 71.8
(0.3)
P 		19.9
(-3)
P 		19.8
(-3)
P 		113.2
(3)
P 		93
C 103.8
(3)
P 		33.5
(-2.9)
P 		32.4
(-3)
P 		79.3
(0.9)
P 		71
avr 88
(3) 		24.7
(-3) 		25.1
(-3) 		85.4
(2.8) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 21.1
(-2.3)
P 		46.3
(3)
P 		17.8
(-3)
P 		26.3
(-1.2)
P 		31
(-0.2)
P 		31.4
(-0.1)
P 		29
B 44.6
(-0.1)
P 		30.5
(-2.8)
P 		32.4
(-2.4)
P 		29.5
(-3)
P 		60.3
(3)
P 		40.5
(-0.9)
P 		31
C 64.8
(3)
P 		36.7
(-0.8)
P 		22.6
(-2.7)
P 		20.2
(-3)
P 		41.7
(-0.1)
P 		35.9
(-0.9)
P 		45
avr 43.5
(2.8) 		37.8
(1.1) 		24.3
(-3) 		25.3
(-2.7) 		44.3
(3) 		35.9
(0.5) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175113_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21808
Sequence Type Exemplar sequence
Representative Public ID AV203636 NCBI
Target Description AV203636 /REP_DB=TREMBL Accession /GB=AV203636 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk579b1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075477(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075477 NCBI Caenorhabditis elegans Y113G7A.15 (Y113G7A.15) mRNA, complete cds. 11/11 None
Y113G7A.15 ENSEMBL cdna:known chromosome:CEL140:V:20092341:20092992:-1 gene:Y113G7A.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016734 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20092350-20092811(-) 72.86 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7A.15
Entrez Gene 180316 Entrez gene
SwissProt Q95ZJ6 EMBL-EBI
WormBase CE27229 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42356 Hypothetical protein Y113G7A.15 [Caenorhabditis elegans] ref|NP_507878.1| Y113G7A.15 [Caenorhabditis elegans] 2.0E-46
blast CAE67429 Hypothetical protein CBG12919 [Caenorhabditis briggsae] 8.0E-21
Sequence
Target Sequence 
>C. ELEGANS:175113_AT
tcgagatgtatcaacgacgtttgtcggcggctcccgacaactcatattattatcaaattt
ccccgccacatcatcaacgcatttcctcacttccgctgaccattttcccgctgccagaca
aacgattgcatcggataggcggaaatattgttatgggaaaataaaatgacatcttctttg
gctacaaacacactaatactactactactac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAGATGTATCAACGACGTTTGTC 301 603 16 Antisense
TATCAACGACGTTTGTCGGCGGCTC 595 659 24 Antisense
GGCTCCCGACAACTCATATTATTAT 417 539 44 Antisense
ATTTTCCCGCTGCCAGACAAACGAT 318 13 117 Antisense
GCTGCCAGACAAACGATTGCATCGG 528 297 125 Antisense
ACGATTGCATCGGATAGGCGGAAAT 96 93 137 Antisense
GATAGGCGGAAATATTGTTATGGGA 497 415 149 Antisense
TAAAATGACATCTTCTTTGGCTACA 622 639 177 Antisense
GACATCTTCTTTGGCTACAAACACA 691 369 183 Antisense
GGCTACAAACACACTAATACTACTA 296 537 195 Antisense
AACACACTAATACTACTACTACTAC 477 135 202 Antisense
Sequence Source Affymetrix Proprietary Database