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[175111_at]

Description AV203420 /REP_DB=TREMBL Accession /GB=AV203420 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk576c4 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 95      6grp_total > 75      4grp_total > 49      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 48.2
(-3)
P 		58.2
(-1.4)
M 		85.4
(3)
P 		63.2
(-0.6)
A 		37
B 35.4
(-3)
P 		67.3
(3)
P 		66.1
(2.8)
P 		38.4
(-2.4)
A 		32
C 51.4
(-1.5)
P 		113.3
(3)
P 		78.6
(0.5)
P 		31
(-3)
M 		82
avr 45
(-2.9) 		79.6
(3) 		76.7
(2.5) 		44.2
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 65.5
(-0.1)
P 		37.8
(-3)
P 		50.4
(-1.7)
P 		94.2
(2.8)
P 		63.4
(-0.4)
P 		96.1
(3)
P 		58
B 53.5
(-3)
P 		64.9
(-1.9)
P 		94.1
(1)
P 		74.6
(-0.9)
P 		53.5
(-3)
P 		114.8
(3)
P 		61
C 74.6
(-1.9)
P 		63.8
(-3)
P 		74
(-2)
A 		102.2
(0.7)
P 		90.7
(-0.4)
P 		125.4
(3)
P 		62
avr 64.5
(-2) 		55.5
(-3) 		72.8
(-1.2) 		90.3
(0.7) 		69.2
(-1.5) 		112.1
(3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 17.6
(0.8)
P 		12.6
(-1.5)
M 		22.3
(3)
P 		9.3
(-3)
A 		13
B 11.3
(-0.8)
P 		16.6
(3)
P 		15.3
(2.1)
P 		8.2
(-3)
A 		8
C 17
(-0.4)
P 		32.6
(3)
P 		27.4
(1.9)
P 		5.2
(-3)
M 		27
avr 15.3
(0.3) 		20.6
(2.5) 		21.7
(3) 		7.6
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 12.1
(-2.5)
P 		13.5
(-1.8)
P 		11
(-3)
P 		23.9
(3)
P 		19.1
(0.8)
P 		23.4
(2.8)
P 		13
B 18.6
(-3)
P 		21.6
(-2.3)
P 		22.8
(-2)
P 		19.7
(-2.7)
P 		21.7
(-2.2)
P 		42.8
(3)
P 		24
C 27.7
(-0.7)
P 		19.5
(-2.8)
P 		18.8
(-3)
A 		20.6
(-2.5)
P 		29.4
(-0.3)
P 		42
(3)
P 		23
avr 19.5
(-2.4) 		18.2
(-2.8) 		17.5
(-3) 		21.4
(-1.7) 		23.4
(-1.1) 		36.1
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175111_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20939
Sequence Type Exemplar sequence
Representative Public ID AV203420 NCBI
Target Description AV203420 /REP_DB=TREMBL Accession /GB=AV203420 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk576c4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066246(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066246 NCBI Caenorhabditis elegans C07H6.9 (C07H6.9) mRNA, complete cds. 11/11 None
C07H6.9 ENSEMBL cdna:known chromosome:CEL140:III:7498738:7499284:-1 gene:C07H6.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039503 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7498745-7499067(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07H6.9
Entrez Gene 176062 Entrez gene
SwissProt Q95YF2 EMBL-EBI
WormBase CE29075 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL00853 Hypothetical protein C07H6.9 [Caenorhabditis elegans] ref|NP_498647.1| C07H6.9 [Caenorhabditis elegans] 9.0E-77
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498647.1 3 33-55,62-84,94-116
C07H6.9 3 33-55,62-84,94-116
Sequence
Target Sequence 
>C. ELEGANS:175111_AT
acaatggagtccaacgtctcaatgttattacgattaccacaaattttataaaaatggtgg
tggatgtgtcctgtttcggaacaatttattttgttggcagctcgaaaatattgcctattg
tggatttggcgtatttcaattgtgttatccaaccgtgtcggtttcttatattcatcgtat
actgccatcacggagctagatgtgacgcatatcacagatttctggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATGGAGTCCAACGTCTCAATGT 28 113 32 Antisense
GTCTCAATGTTATTACGATTACCAC 568 469 47 Antisense
GGTGGATGTGTCCTGTTTCGGAACA 307 499 90 Antisense
AATTTATTTTGTTGGCAGCTCGAAA 92 175 114 Antisense
CCTATTGTGGATTTGGCGTATTTCA 697 265 145 Antisense
AATTGTGTTATCCAACCGTGTCGGT 643 177 169 Antisense
ACCGTGTCGGTTTCTTATATTCATC 614 87 183 Antisense
TATATTCATCGTATACTGCCATCAC 445 661 198 Antisense
GTATACTGCCATCACGGAGCTAGAT 161 453 208 Antisense
ACGGAGCTAGATGTGACGCATATCA 158 97 221 Antisense
TGACGCATATCACAGATTTCTGGTT 111 571 234 Antisense
Sequence Source Affymetrix Proprietary Database