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[175110_at]

Description AU109481 /REP_DB=TREMBL Accession /GB=AU109481 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk707c7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 74      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 92      6grp_total > 65      4grp_total > 24      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 149.8
(-3)
P 		204.2
(0.9)
P 		181.8
(-0.7)
P 		233.3
(3)
P 		84
B 158.3
(-3)
P 		159.1
(-3)
P 		243.9
(0.1)
P 		321.6
(3)
P 		163
C 113.7
(-3)
P 		278.6
(0)
P 		291.4
(0.3)
P 		440.3
(3)
P 		327
avr 140.6
(-3) 		214
(-0.7) 		239
(0.1) 		331.7
(3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 422
1 2 3 4 5 6 range
A 172.5
(-3)
P 		258.5
(-1.1)
P 		437.9
(3)
P 		336.8
(0.7)
P 		206.7
(-2.2)
P 		243.5
(-1.4)
P 		265
B 133.1
(-3)
P 		290.9
(0.3)
P 		399.3
(2.6)
P 		274.7
(-0)
P 		246.4
(-0.6)
P 		420.2
(3)
P 		287
C 227
(-2.7)
P 		209.8
(-3)
P 		285.7
(-1.7)
P 		369.5
(-0.2)
P 		231.3
(-2.6)
P 		554.6
(3)
P 		345
avr 177.5
(-3) 		253.1
(-1) 		374.3
(2.2) 		327
(0.9) 		228.1
(-1.7) 		406.1
(3) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 54.6
(3)
P 		44.3
(-0)
P 		47.5
(0.9)
P 		34.1
(-3)
P 		21
B 50.5
(-0.7)
P 		39.3
(-3)
P 		56.5
(0.5)
P 		68.5
(3)
P 		29
C 37.6
(-3)
P 		80.1
(1)
P 		101.6
(3)
P 		74.2
(0.4)
P 		64
avr 47.6
(-3) 		54.6
(-1) 		68.5
(3) 		58.9
(0.2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 31.8
(-3)
P 		91.9
(2.7)
P 		95.4
(3)
P 		85.4
(2.1)
P 		62.4
(-0.1)
P 		59.3
(-0.4)
P 		64
B 46.3
(-3)
P 		96.8
(-0.3)
P 		97
(-0.2)
P 		72.8
(-1.6)
P 		100.1
(-0.1)
P 		156.7
(3)
P 		110
C 84.1
(-2)
P 		64
(-3)
P 		72.7
(-2.6)
P 		74.3
(-2.5)
P 		74.8
(-2.5)
P 		185.7
(3)
P 		122
avr 54.1
(-3) 		84.2
(-0.7) 		88.4
(-0.4) 		77.5
(-1.2) 		79.1
(-1.1) 		133.9
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175110_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20936
Sequence Type Exemplar sequence
Representative Public ID AU109481 NCBI
Target Description AU109481 /REP_DB=TREMBL Accession /GB=AU109481 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk707c7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065652(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065652 NCBI Caenorhabditis elegans C27F2.9 (C27F2.9) mRNA, complete cds. 11/11 None
SNAP00000001013 ENSEMBL cdna:SNAP chromosome:CEL140:III:4960571:4962999:-1 11/11 None
GENEFINDER00000001026 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4961914:4963903:-1 11/11 None
C27F2.9 ENSEMBL cdna:known chromosome:CEL140:III:4961839:4963031:-1 gene:C27F2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4962479-4962877(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C27F2.9
Entrez Gene 175673 Entrez gene
SwissProt Q95QU1 EMBL-EBI
WormBase CE37750 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.30007.1.S1_AT similar to RIKEN cDNA 2610003J06 cfa
CHICKEN:GGA.7133.1.S1_AT similar to RIKEN cDNA 2610003J06 gga
HU35KSUBA:AA089853_AT hypothetical LOC339123 hs
HU35KSUBD:RC_AA432370_AT hypothetical LOC339123 hs
U133_X3P:HS.25197.2.A1_3P_AT hypothetical LOC339123 hs
HG-U133_PLUS_2:224886_AT hypothetical LOC339123 hs
HG-U133B:224886_AT hypothetical LOC339123 hs
HG-U95C:65828_AT hypothetical LOC339123 hs
MOE430A:1424743_AT RIKEN cDNA 2610003J06 gene mm
MOUSE430A_2:1424743_AT RIKEN cDNA 2610003J06 gene mm
MOUSE430_2:1424743_AT RIKEN cDNA 2610003J06 gene mm
MG-U74AV2:94520_AT RIKEN cDNA 2610003J06 gene (2610003J06Rik), mRNA mm
MU11KSUBA:AA003161_S_AT RIKEN cDNA 2610003J06 gene (2610003J06Rik), mRNA mm
MU19KSUBC:TC39463_AT RIKEN cDNA 2610003J06 gene (2610003J06Rik), mRNA mm
RG-U34B:RC_AA851397_AT similar to RIKEN cDNA 2610003J06 (predicted) rn
RG-U34C:RC_AA818462_F_AT similar to RIKEN cDNA 2610003J06 (predicted) rn
RAE230A:1374124_AT similar to RIKEN cDNA 2610003J06 (predicted) rn
RAT230_2:1374124_AT similar to RIKEN cDNA 2610003J06 (predicted) rn
RAE230A:1371903_AT STIP1 homology and U-Box containing protein 1 (predicted) rn
RAT230_2:1371903_AT STIP1 homology and U-Box containing protein 1 (predicted) rn
RG-U34A:RC_AA892120_AT STIP1 homology and U-Box containing protein 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast T15660 hypothetical protein C27F2.5 - Caenorhabditis elegans 0.0
blast NP_498053 C27F2.9 [Caenorhabditis elegans] gb|AAK67216.3| Hypothetical protein C27F2.9 [Caenorhabditis elegans] 1.0E-148
blast NP_498053 C27F2.9 [Caenorhabditis elegans] gb|AAK67216.3| Hypothetical protein C27F2.9 [Caenorhabditis elegans] 1.0E-145
blast NP_498053 C27F2.9 [Caenorhabditis elegans] gb|AAK67216.3| Hypothetical protein C27F2.9 [Caenorhabditis elegans] 1.0E-130
blast NP_498052 C27F2.5 [Caenorhabditis elegans] gb|AAK67217.1| Hypothetical protein C27F2.5 [Caenorhabditis elegans] 1.0E-122
blast CAE71313 Hypothetical protein CBG18204 [Caenorhabditis briggsae] 3.0E-81
blast XP_547212 PREDICTED: similar to RIKEN cDNA 2610003J06 [Canis familiaris] 3.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR007286 EMBL-EBI EAP30 4.2E-63
Sequence
Target Sequence 
>C. ELEGANS:175110_AT
gcaagtgcaatattgaacgacatgatgctcaggaattaactcaaaaagagtttctgaaga
gatatgcatattccgagccggtcatcatctacaacatcgataacgatgagttccaaaagc
ttactgaaaaagctgaaatgctttcaacgtggcgcgatgcgatgtaactcttaattcggc
gaatacctacagctacacaagagttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGTGCAATATTGAACGACATGA 116 321 49 Antisense
GAACGACATGATGCTCAGGAATTAA 436 347 63 Antisense
AGATATGCATATTCCGAGCCGGTCA 98 65 108 Antisense
TATTCCGAGCCGGTCATCATCTACA 86 665 117 Antisense
ATCATCTACAACATCGATAACGATG 533 29 132 Antisense
AACGATGAGTTCCAAAAGCTTACTG 56 145 150 Antisense
AAATGCTTTCAACGTGGCGCGATGC 1 121 184 Antisense
GGCGCGATGCGATGTAACTCTTAAT 147 543 199 Antisense
GATGTAACTCTTAATTCGGCGAATA 218 409 209 Antisense
TTCGGCGAATACCTACAGCTACACA 58 695 223 Antisense
ATACCTACAGCTACACAAGAGTTCC 695 21 231 Antisense
Sequence Source Affymetrix Proprietary Database