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[175109_at]

Description AU114824 /REP_DB=TREMBL Accession /GB=AU114824 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk728g8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 31      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 25      6grp_total > 42      4grp_total > 60      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4689
1 2 3 4 range
A 5334.1
(1.3)
P 		6660.8
(3)
P 		6178.2
(2.4)
P 		1971.6
(-3)
P 		4689
B 5304.8
(1.7)
P 		5283.1
(1.6)
P 		6214.3
(3)
P 		2085.2
(-3)
P 		4129
C 5507.5
(2.3)
P 		5485.7
(2.3)
P 		5891.7
(3)
P 		2396.5
(-3)
P 		3495
avr 5382.1
(1.9) 		5809.9
(2.6) 		6094.7
(3) 		2151.1
(-3) 		3944

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3746
1 2 3 4 5 6 range
A 4416.3
(0)
P 		4100.2
(-0.5)
P 		6263.6
(3)
P 		4066.8
(-0.5)
P 		3011.4
(-2.2)
P 		2518.1
(-3)
P 		3746
B 4518.2
(0)
P 		4978.7
(0.9)
P 		6016.3
(3)
P 		3706.4
(-1.6)
P 		3730.5
(-1.6)
P 		3014.7
(-3)
P 		3002
C 4156.3
(0.4)
P 		4911.2
(3)
P 		4497.3
(1.6)
P 		4606.5
(1.9)
P 		3185.1
(-3)
P 		3245.1
(-2.8)
P 		1726
avr 4363.6
(0.2) 		4663.4
(0.9) 		5592.4
(3) 		4126.6
(-0.3) 		3309
(-2.1) 		2926
(-3) 		2666
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1765
1 2 3 4 range
A 1942.1
(3)
P 		1445.9
(1.2)
P 		1615.1
(1.8)
P 		288.6
(-3)
P 		1654
B 1691.7
(3)
P 		1304.8
(1.1)
P 		1440
(1.8)
P 		444.4
(-3)
P 		1247
C 1823.2
(2.2)
P 		1577.2
(1.3)
P 		2053.4
(3)
P 		404.1
(-3)
P 		1649
avr 1819
(3) 		1442.6
(1.4) 		1702.8
(2.5) 		379
(-3) 		1440

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1044
1 2 3 4 5 6 range
A 814.1
(-1.6)
P 		1458.2
(3)
P 		1364.1
(2.3)
P 		1031.4
(-0)
P 		908.7
(-0.9)
P 		613.1
(-3)
P 		845
B 1572.1
(2.2)
P 		1657.2
(3)
P 		1460.9
(1.3)
P 		981.7
(-3)
P 		1515.6
(1.7)
P 		1124.2
(-1.7)
P 		676
C 1540.6
(3)
P 		1498.6
(2.6)
P 		1144.6
(-0.9)
P 		926.4
(-3)
P 		1030.6
(-2)
P 		1086.3
(-1.4)
P 		614
avr 1308.9
(0.7) 		1538
(3) 		1323.2
(0.8) 		979.8
(-2.6) 		1151.6
(-0.9) 		941.2
(-3) 		597
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175109_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22241
Sequence Type Exemplar sequence
Representative Public ID AU114824 NCBI
Target Description AU114824 /REP_DB=TREMBL Accession /GB=AU114824 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk728g8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076490(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076490 NCBI Caenorhabditis elegans Y34B4A.9 (Y34B4A.9) mRNA, complete cds. 11/11 None
GENEFINDER00000022895 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5255159:5260606:1 9/11 None
SNAP00000022879 ENSEMBL cdna:SNAP chromosome:CEL140:X:5255660:5256731:1 9/11 None
Y34B4A.9.2 ENSEMBL cdna:known chromosome:CEL140:X:5255157:5256816:1 gene:Y34B4A.9 11/11 None
Y34B4A.9.1 ENSEMBL cdna:known chromosome:CEL140:X:5255159:5256816:1 gene:Y34B4A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5256366-5256744(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y34B4A.9
Entrez Gene 180796 Entrez gene
SwissProt Q95Y28 EMBL-EBI
WormBase CE27401 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84603 Hypothetical protein Y34B4A.9 [Caenorhabditis elegans] ref|NP_508891.1| Y34B4A.9 [Caenorhabditis elegans] 1.0E-134
blast AAK84603 Hypothetical protein Y34B4A.9 [Caenorhabditis elegans] ref|NP_508891.1| Y34B4A.9 [Caenorhabditis elegans] 1.0E-128
blast AAK84603 Hypothetical protein Y34B4A.9 [Caenorhabditis elegans] ref|NP_508891.1| Y34B4A.9 [Caenorhabditis elegans] 1.0E-83
blast AAK84601 Hypothetical protein Y34B4A.5 [Caenorhabditis elegans] ref|NP_508892.1| Y34B4A.5 [Caenorhabditis elegans] 5.0E-79
blast CAE68719 Hypothetical protein CBG14645 [Caenorhabditis briggsae] 8.0E-59
blast CAE68718 Hypothetical protein CBG14644 [Caenorhabditis briggsae] 3.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 3.0E-68
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 4.6E-71
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 2.4E-66
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000022895 2 465-487,580-602
Sequence
Target Sequence 
>C. ELEGANS:175109_AT
gatgtcctgagacaatgccgactagattatgaggtgaacagtgacgttgacgcaaatcag
gcttgcacacaagccaataagtacttgatttgcttcgaaactcagttcaaaaacaactgt
ggtgaaaaatcaaacgatgccatgttctgggcttgtgaatactcaagagtcaatgttttt
actcgattccctcaatgtgcagctagatgtgttttgccatatagcggaggaatcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTCCTGAGACAATGCCGACTAG 382 409 13 Antisense
TGCCGACTAGATTATGAGGTGAACA 195 585 28 Antisense
GAGGTGAACAGTGACGTTGACGCAA 492 401 43 Antisense
GTTGACGCAAATCAGGCTTGCACAC 306 439 58 Antisense
GTACTTGATTTGCTTCGAAACTCAG 400 459 93 Antisense
AACGATGCCATGTTCTGGGCTTGTG 292 143 145 Antisense
ATGTTCTGGGCTTGTGAATACTCAA 567 45 154 Antisense
AGTCAATGTTTTTACTCGATTCCCT 132 63 180 Antisense
GATTCCCTCAATGTGCAGCTAGATG 522 433 197 Antisense
GTGCAGCTAGATGTGTTTTGCCATA 435 481 209 Antisense
TTTGCCATATAGCGGAGGAATCATC 339 669 225 Antisense
Sequence Source Affymetrix Proprietary Database