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[175108_at]

Description AV194753 /REP_DB=TREMBL Accession /GB=AV194753 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk633c9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 89      4grp_highest_8_8 > 63      4grp_high_8_8 > 27      6grp_highest_nonorm > 83      6grp_total > 98      4grp_total > 29      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 429.1
(1.6)
P 		477.8
(3)
P 		275.7
(-3)
P 		447.2
(2.1)
P 		202
B 408.7
(2.8)
P 		351.5
(0.3)
P 		275
(-3)
P 		413.4
(3)
P 		138
C 421.2
(1.5)
P 		409.3
(0.8)
P 		340.1
(-3)
P 		448.1
(3)
P 		108
avr 419.7
(2.3) 		412.9
(2) 		296.9
(-3) 		436.2
(3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 404
1 2 3 4 5 6 range
A 498
(2)
P 		271
(-3)
P 		407.9
(0)
P 		308.4
(-2.2)
P 		543.2
(3)
P 		438.4
(0.7)
P 		272
B 410.8
(-2.5)
P 		394.3
(-2.8)
P 		384.3
(-3)
P 		476.5
(-1.1)
P 		571.7
(0.9)
P 		675.3
(3)
P 		291
C 356.9
(-1.6)
P 		481.1
(0.7)
P 		278.6
(-3)
P 		385.9
(-1)
P 		373.2
(-1.3)
P 		605.3
(3)
P 		327
avr 421.9
(-1.2) 		382.1
(-2.3) 		356.9
(-3) 		390.3
(-2.1) 		496
(0.9) 		573
(3) 		216
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 156.2
(3)
P 		103.7
(-0.5)
P 		72.1
(-2.6)
P 		65.5
(-3)
P 		91
B 130.3
(3)
P 		86.8
(-0.9)
P 		63.7
(-3)
P 		88.1
(-0.8)
P 		67
C 139.4
(3)
P 		117.7
(1)
P 		118.5
(1)
P 		75.6
(-3)
P 		64
avr 142
(3) 		102.7
(-0.6) 		84.8
(-2.2) 		76.4
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 91.8
(-2)
P 		96.4
(-1.7)
P 		88.8
(-2.3)
P 		78.2
(-3)
P 		163.9
(3)
P 		106.7
(-1)
P 		86
B 142.9
(-1.1)
P 		131.2
(-1.6)
P 		93.3
(-3)
P 		126.2
(-1.8)
P 		232.3
(2.3)
P 		251.8
(3)
P 		159
C 132.3
(-0.2)
P 		146.8
(0.5)
P 		70.9
(-3)
P 		77.6
(-2.7)
P 		120.8
(-0.7)
P 		202.6
(3)
P 		132
avr 122.3
(-0.8) 		124.8
(-0.6) 		84.3
(-3) 		94
(-2.4) 		172.3
(2.1) 		187
(3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175108_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21207
Sequence Type Exemplar sequence
Representative Public ID AV194753 NCBI
Target Description AV194753 /REP_DB=TREMBL Accession /GB=AV194753 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk633c9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067080
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y66D12A.21 ENSEMBL cdna:known chromosome:CEL140:III:11502906:11505153:-1 gene:Y66D12A.21 None
NM_067080 NCBI Caenorhabditis elegans Y66D12A.21 (Y66D12A.21) mRNA, complete cds. None
SNAP00000020808 ENSEMBL cdna:SNAP chromosome:CEL140:III:11497958:11523634:-1 None
GENEFINDER00000020842 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11502906:11505143:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11502866-11503965(-) 99.69 99.69
Public Domain and Genome References
Gene Title
Ensembl Y66D12A.21
Entrez Gene 176581 Entrez gene
SwissProt Q95PJ8 EMBL-EBI
WormBase CE26465 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597262_AT similar to beta-amyloid binding protein precursor cfa
CANINE_2:CFA.6050.1.A1_AT similar to beta-amyloid binding protein precursor cfa
CANINE_2:CFAAFFX.28770.1.S1_AT similar to beta-amyloid binding protein precursor cfa
DROSOPHILA_2:1639094_AT dm
DROSGENOME1:154395_AT dm
CHICKEN:GGA.3144.1.S1_AT similar to beta-amyloid binding protein precursor gga
HG-U133_PLUS_2:213883_S_AT TM2 domain containing 1 hs
HG-U133A_2:213883_S_AT TM2 domain containing 1 hs
HG-FOCUS:213883_S_AT TM2 domain containing 1 hs
HG-U133A:213883_S_AT TM2 domain containing 1 hs
HG-U133_PLUS_2:211703_S_AT TM2 domain containing 1 hs
HG-U133A:211703_S_AT TM2 domain containing 1 hs
HG-U133A_2:211703_S_AT TM2 domain containing 1 hs
HG-U95AV2:40601_AT TM2 domain containing 1 hs
HU35KSUBA:R99199_AT TM2 domain containing 1 hs
U133_X3P:G13625458_3P_S_AT TM2 domain containing 1 hs
U133_X3P:HS2.226776.1.S1_3P_AT TM2 domain containing 1 hs
HG-U133_PLUS_2:1558802_AT TM2 domain containing 1 hs
HG-U95E:72585_R_AT TM2 domain containing 1 hs
HG-U133_PLUS_2:212963_AT TM2 domain containing 1 hs
HG-U133A_2:212963_AT TM2 domain containing 1 hs
HG-U133A:212963_AT TM2 domain containing 1 hs
HG-U133A_2:213882_AT TM2 domain containing 1 hs
HG-U133_PLUS_2:213882_AT TM2 domain containing 1 hs
HG-U133A:213882_AT TM2 domain containing 1 hs
HG-U133_PLUS_2:236524_AT TM2 domain containing 1 hs
HG-U133B:236524_AT TM2 domain containing 1 hs
HG-U95B:42614_AT TM2 domain containing 1 hs
HG-U95E:85190_AT TM2 domain containing 1 hs
HU35KSUBD:RC_AA441857_AT TM2 domain containing 1 hs
HU35KSUBD:RC_H52617_AT TM2 domain containing 1 hs
U133_X3P:HS.180532.3.A1_3P_AT TM2 domain containing 1 hs
U133_X3P:HS.226776.0.A1_3P_AT TM2 domain containing 1 hs
MOE430A:1426254_AT TM2 domain containing 1 mm
MOUSE430A_2:1426254_AT TM2 domain containing 1 mm
MOUSE430_2:1426254_AT TM2 domain containing 1 mm
MG-U74AV2:104608_AT TM2 domain containing 1 mm
MOE430A:1451996_AT TM2 domain containing 1 mm
MOUSE430A_2:1451996_AT TM2 domain containing 1 mm
MOUSE430_2:1451996_AT TM2 domain containing 1 mm
MOE430B:1445244_AT Beta-amyloid binding protein (Bbp) mm
MOUSE430_2:1445244_AT Beta-amyloid binding protein (Bbp) mm
MU11KSUBA:AA017855_S_AT Beta-amyloid binding protein (Bbp) mm
MU19KSUBA:TC19498_R_AT Beta-amyloid binding protein (Bbp) mm
RG-U34B:RC_AA943505_G_AT beta-amyloid binding protein precursor (predicted) rn
RG-U34B:RC_AA997700_AT beta-amyloid binding protein precursor (predicted) rn
RG-U34B:RC_AA943505_AT beta-amyloid binding protein precursor (predicted) rn
RG-U34C:RC_AI138002_AT beta-amyloid binding protein precursor (predicted) rn
RAE230A:1367550_A_AT beta-amyloid binding protein precursor (predicted) rn
RAE230B:1367550_A_AT beta-amyloid binding protein precursor (predicted) rn
RAT230_2:1367550_A_AT beta-amyloid binding protein precursor (predicted) rn
RAE230A:1385838_A_AT beta-amyloid binding protein precursor (predicted) rn
RAT230_2:1385838_A_AT beta-amyloid binding protein precursor (predicted) rn
RAE230A:1385839_X_AT beta-amyloid binding protein precursor (predicted) rn
RAT230_2:1385839_X_AT beta-amyloid binding protein precursor (predicted) rn
RAE230B:1391638_AT beta-amyloid binding protein precursor (predicted) rn
RAT230_2:1391638_AT beta-amyloid binding protein precursor (predicted) rn
RG-U34B:RC_AI060271_AT Beta-amyloid binding protein precursor (predicted) rn
RG-U34C:RC_AI175138_AT Beta-amyloid binding protein precursor (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAC70137 Hypothetical protein Y66D12A.17 [Caenorhabditis elegans] ref|NP_499485.1| Y66D12A.17 [Caenorhabditis elegans] 0.0
blast CAE67701 Hypothetical protein CBG13271 [Caenorhabditis briggsae] 0.0
blast CAC35892 Hypothetical protein Y66D12A.21 [Caenorhabditis elegans] ref|NP_499481.1| Y66D12A.21 [Caenorhabditis elegans] 1.0E-179
blast CAC35892 Hypothetical protein Y66D12A.21 [Caenorhabditis elegans] ref|NP_499481.1| Y66D12A.21 [Caenorhabditis elegans] 1.0E-149
blast CAB01894 Hypothetical protein M163.4 [Caenorhabditis elegans] ref|NP_510409.1| GEI-4(Four) Interacting protein family member (gfi-3) [Caenorhabditis elegans] 1.0E-124
blast CAE67703 Hypothetical protein CBG13274 [Caenorhabditis briggsae] 6.0E-69
blast EAA04638 ENSANGP00000019188 [Anopheles gambiae str. PEST] ref|XP_308388.2| ENSANGP00000019188 [Anopheles gambiae str. PEST] 8.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR007829 EMBL-EBI TM2 4.6E-8
Pfam IPR007829 EMBL-EBI TM2 1.5E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499481.1 2 83-105,110-132
Y66D12A.21 2 83-105,110-132
SNAP00000020808 1 866-888
GENEFINDER00000020842 2 83-105,110-132
Sequence
Target Sequence 
>C. ELEGANS:175108_AT
catgtcagctacaccacaacagtacttttatcgatttttctcggattttttggaattgat
cggatttatctcgggtattatgcgttaggtctcatcaaaatgttctcacttggcggtctc
tttgtgttttggcttgtcgatatcattcttataagcctacaattactgggcccggccgat
ggtacggcctacgctatggcttattatgggccgaaggcccaaatgataaggttcgacagt
cacaccaacttctcgttctacacctgcgatggatgtctgtaattttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGTCAGCTACACCACAACAGTAC 235 209 17 Antisense
TACACCACAACAGTACTTTTATCGA 133 643 26 Antisense
GGGTATTATGCGTTAGGTCTCATCA 155 497 89 Antisense
GTCTCATCAAAATGTTCTCACTTGG 344 469 105 Antisense
TCAAAATGTTCTCACTTGGCGGTCT 562 627 111 Antisense
TCACTTGGCGGTCTCTTTGTGTTTT 182 625 122 Antisense
GGCTTATTATGGGCCGAAGGCCCAA 656 537 214 Antisense
GAAGGCCCAAATGATAAGGTTCGAC 62 333 229 Antisense
AAGGTTCGACAGTCACACCAACTTC 669 159 244 Antisense
ACACCTGCGATGGATGTCTGTAATT 407 109 276 Antisense
CCTGCGATGGATGTCTGTAATTTTC 195 263 279 Antisense
Sequence Source Affymetrix Proprietary Database