[Home] | [Total List]

[175107_s_at]

Description AV193072 /REP_DB=TREMBL Accession /GB=AV193072 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk613a5 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 66      6grp_total > 45      4grp_total > 16      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3821
1 2 3 4 range
A 1745.9
(-3)
P 		2663.4
(-1.1)
P 		2589.8
(-1.3)
P 		4662.1
(3)
P 		2916
B 1904.8
(-3)
P 		2492.1
(-2)
P 		2739
(-1.6)
P 		5566.7
(3)
P 		3662
C 1822.1
(-3)
P 		2292.1
(-2.2)
P 		2633.7
(-1.6)
P 		5196.4
(3)
P 		3374
avr 1824.3
(-3) 		2482.5
(-1.8) 		2654.2
(-1.5) 		5141.7
(3) 		3317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 855
1 2 3 4 5 6 range
A 1641.1
(1.2)
P 		1650.3
(1.3)
P 		1892
(3)
P 		1609
(1)
P 		1051.5
(-3)
P 		1591.9
(0.9)
P 		841
B 1727.2
(2.3)
P 		1804
(3)
P 		1663.7
(1.8)
P 		1115
(-3)
P 		1154.5
(-2.7)
P 		1427
(-0.3)
P 		689
C 1571.8
(0.3)
P 		1855.9
(2.6)
P 		1569.6
(0.3)
P 		1603.2
(0.6)
P 		1153.8
(-3)
P 		1906.6
(3)
P 		753
avr 1646.7
(1.9) 		1770.1
(3) 		1708.4
(2.4) 		1442.4
(-0) 		1119.9
(-3) 		1641.8
(1.8) 		650
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 608
1 2 3 4 range
A 635.7
(0.3)
P 		578.1
(-3)
P 		677
(2.7)
P 		682.4
(3)
P 		104
B 607.4
(-3)
P 		615.5
(-2.9)
P 		634.7
(-2.7)
P 		1186.3
(3)
P 		579
C 603.2
(-3)
P 		659
(-1.9)
P 		917.9
(3)
P 		876.2
(2.2)
P 		315
avr 615.4
(-3) 		617.5
(-3) 		743.2
(-0.4) 		915
(3) 		300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 302.5
(-3)
P 		586.9
(3)
P 		412
(-0.7)
P 		408.1
(-0.8)
P 		317.3
(-2.7)
P 		387.6
(-1.2)
P 		284
B 601
(3)
P 		600.5
(3)
P 		404
(-0.9)
P 		295.3
(-3)
P 		469.1
(0.4)
P 		532.1
(1.6)
P 		306
C 582.6
(1.9)
P 		566.3
(1.6)
P 		399.5
(-1.5)
P 		322.4
(-3)
P 		373.4
(-2)
P 		638.2
(3)
P 		316
avr 495.4
(0.8) 		584.6
(3) 		405.2
(-1.4) 		341.9
(-3) 		386.6
(-1.9) 		519.3
(1.4) 		243
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175107_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21199
Sequence Type Exemplar sequence
Representative Public ID AV193072 NCBI
Target Description AV193072 /REP_DB=TREMBL Accession /GB=AV193072 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk613a5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067079(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067079 NCBI Caenorhabditis elegans Transport to INner mitochondrial membrane (yeast TIM) family member (tin-10) (tin-10) mRNA, complete cds. 11/11 None
GENEFINDER00000020837 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11500883:11502710:-1 10/11 None
Y66D12A.22.2 ENSEMBL cdna:known chromosome:CEL140:III:11500743:11502726:-1 gene:Y66D12A.22 11/11 None
Y66D12A.22.1 ENSEMBL cdna:known chromosome:CEL140:III:11500771:11502728:-1 gene:Y66D12A.22 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11500822-11502698(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tin-10
Ensembl Y66D12A.22
Entrez Gene 176580 Entrez gene
SwissProt Q9Y0V6 EMBL-EBI
WormBase CE28800 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1596648_AT similar to translocase of inner mitochondrial membrane 10 homolog cfa
CANINE_2:CFA.19841.1.S1_AT similar to translocase of inner mitochondrial membrane 10 homolog cfa
CANINE_2:CFAAFFX.12574.1.S1_S_AT similar to translocase of inner mitochondrial membrane 10 homolog cfa
DROSOPHILA_2:1637509_S_AT dm
DROSGENOME1:141212_AT dm
CHICKEN:GGA.10392.1.S1_AT Translocase of inner mitochondrial membrane 10 homolog (yeast) gga
HG-U133_PLUS_2:218408_AT translocase of inner mitochondrial membrane 10 homolog (yeast) hs
HG-U133A:218408_AT translocase of inner mitochondrial membrane 10 homolog (yeast) hs
HG-FOCUS:218408_AT translocase of inner mitochondrial membrane 10 homolog (yeast) hs
HG-U133A_2:218408_AT translocase of inner mitochondrial membrane 10 homolog (yeast) hs
HU35KSUBA:AA417126_AT translocase of inner mitochondrial membrane 10 homolog (yeast) hs
HU35KSUBD:RC_AA412533_AT translocase of inner mitochondrial membrane 10 homolog (yeast) hs
U133_X3P:G6912707_3P_AT translocase of inner mitochondrial membrane 10 homolog (yeast) hs
U133_X3P:HS2.235750.2.S1_3P_S_AT translocase of inner mitochondrial membrane 10 homolog (yeast) hs
HG-U133_PLUS_2:1555764_S_AT translocase of inner mitochondrial membrane 10 homolog (yeast) hs
HG-U95B:48109_AT translocase of inner mitochondrial membrane 10 homolog (yeast) hs
HG-U95B:52896_AT translocase of inner mitochondrial membrane 10 homolog (yeast) hs
MU11KSUBA:AA209596_S_AT translocase of inner mitochondrial membrane 10 homolog (yeast) mm
MOE430A:1417499_AT translocase of inner mitochondrial membrane 10 homolog (yeast) mm
MOUSE430A_2:1417499_AT translocase of inner mitochondrial membrane 10 homolog (yeast) mm
MOUSE430_2:1417499_AT translocase of inner mitochondrial membrane 10 homolog (yeast) mm
MG-U74AV2:94012_AT Translocase of inner mitochondrial membrane 13 homolog a (yeast), mRNA (cDNA clone MGC:7178 IMAGE:3257567) mm
MU19KSUBB:TC26636_AT Translocase of inner mitochondrial membrane 13 homolog a (yeast), mRNA (cDNA clone MGC:7178 IMAGE:3257567) mm
RG-U34C:RC_AI180367_AT translocase of inner mitochondrial membrane 10 homolog (yeast) rn
RAE230A:1370366_AT translocase of inner mitochondrial membrane 10 homolog (yeast) rn
RAT230_2:1370366_AT translocase of inner mitochondrial membrane 10 homolog (yeast) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6626 protein targeting to mitochondrion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15450 protein translocase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC70139 Hypothetical protein Y66D12A.22 [Caenorhabditis elegans] ref|NP_499480.1| Transport to INner mitochondrial membrane (yeast TIM) family member (tin-10) [Caenorhabditis elegans] gb|AAD40000.1| small zinc finger-like protein [Caenorhabditis elegans] 6.0E-42
blast CAE67704 Hypothetical protein CBG13275 [Caenorhabditis briggsae] 3.0E-41
blast CAC70139 Hypothetical protein Y66D12A.22 [Caenorhabditis elegans] ref|NP_499480.1| Transport to INner mitochondrial membrane (yeast TIM) family member (tin-10) [Caenorhabditis elegans] gb|AAD40000.1| small zinc finger-like protein [Caenorhabditis elegans] 8.0E-39
blast CAE67704 Hypothetical protein CBG13275 [Caenorhabditis briggsae] 4.0E-38
blast NP_001027735 small zinc finger-like protein [Ciona intestinalis] gb|AAD40001.1| small zinc finger-like protein [Ciona intestinalis] 1.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR004217 EMBL-EBI Zn-finger, Tim10/DDP type 8.5E-25
Pfam IPR004217 EMBL-EBI Zn-finger, Tim10/DDP type 5.2E-30
Sequence
Target Sequence 
>C. ELEGANS:175107_S_AT
agttgcggagcttgaggtggaaatgatgtcggatatgtaccgccgaatgaccaattcgtg
tcaggcaaagtgcattgccaccgccttcagagagtccgaattgacaaagggagaagccgt
ctgcttggatcgttgtgttgcaaagtatctggatgttcacgagaagctcggaaaacggtt
gacaagcatgtcgcaaggagatgaagctgctcttcagaagattgctcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTGCGGAGCTTGAGGTGGAAATG 156 65 31 Antisense
GGATATGTACCGCCGAATGACCAAT 582 509 61 Antisense
ACCAATTCGTGTCAGGCAAAGTGCA 444 81 80 Antisense
CACCGCCTTCAGAGAGTCCGAATTG 398 199 109 Antisense
TGACAAAGGGAGAAGCCGTCTGCTT 133 571 132 Antisense
AGAAGCCGTCTGCTTGGATCGTTGT 656 71 142 Antisense
GGATCGTTGTGTTGCAAAGTATCTG 545 511 157 Antisense
GTATCTGGATGTTCACGAGAAGCTC 274 455 175 Antisense
AACGGTTGACAAGCATGTCGCAAGG 11 145 204 Antisense
TGTCGCAAGGAGATGAAGCTGCTCT 532 557 219 Antisense
GCTGCTCTTCAGAAGATTGCTCAGC 362 297 236 Antisense
Sequence Source Affymetrix Proprietary Database