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[175103_s_at]

Description AU114204 /REP_DB=TREMBL Accession /GB=AU114204 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk716d3 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 29      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_total > 28      4grp_total > 59      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 74.7
(1.6)
P 		89.3
(3)
P 		79.2
(2)
P 		25.9
(-3)
P 		63
B 57.8
(-3)
P 		103.6
(3)
P 		84
(0.4)
P 		71.7
(-1.2)
P 		46
C 96.1
(1.5)
P 		97.6
(1.7)
P 		114.6
(3)
P 		38.2
(-3)
P 		76
avr 76.2
(0.6) 		96.8
(3) 		92.6
(2.5) 		45.3
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 127.9
(3)
P 		91.1
(-0.9)
P 		73.3
(-2.8)
P 		71.6
(-3)
P 		71.8
(-3)
P 		90.5
(-1)
P 		56
B 153
(3)
P 		120.4
(1.3)
P 		74.7
(-1.1)
P 		37.1
(-3)
P 		98.4
(0.2)
P 		107.3
(0.6)
P 		116
C 169.8
(3)
P 		87.6
(-0.5)
P 		30.5
(-3)
P 		45
(-2.4)
A 		81
(-0.8)
P 		83.1
(-0.7)
P 		139
avr 150.2
(3) 		99.7
(-0.1) 		59.5
(-2.5) 		51.2
(-3) 		83.7
(-1) 		93.6
(-0.4) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 27.2
(3)
P 		19.4
(1)
P 		20.7
(1.3)
P 		3.8
(-3)
P 		23
B 18.4
(-1.2)
P 		25.6
(3)
P 		19.5
(-0.6)
P 		15.3
(-3)
P 		10
C 31.8
(1.5)
P 		28.1
(0.9)
P 		39.9
(3)
P 		6.4
(-3)
P 		34
avr 25.8
(2.7) 		24.4
(2.2) 		26.7
(3) 		8.5
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 23.6
(-0.2)
P 		32.4
(3)
P 		16
(-3)
P 		18.1
(-2.2)
P 		21.7
(-0.9)
P 		22
(-0.8)
P 		16
B 53.2
(3)
P 		40.1
(1.2)
P 		18.1
(-1.9)
P 		9.8
(-3)
P 		40
(1.2)
P 		40
(1.2)
P 		43
C 62.9
(3)
P 		26.7
(-0.9)
P 		7.8
(-3)
P 		9
(-2.9)
A 		26.2
(-1)
P 		27.8
(-0.8)
P 		55
avr 46.6
(3) 		33.1
(0.6) 		14
(-2.7) 		12.3
(-3) 		29.3
(-0) 		29.9
(0.1) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175103_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20360
Sequence Type Exemplar sequence
Representative Public ID AU114204 NCBI
Target Description AU114204 /REP_DB=TREMBL Accession /GB=AU114204 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk716d3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059863(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059863 NCBI Caenorhabditis elegans C34B7.1 (C34B7.1) mRNA, complete cds. 11/11 None
GENEFINDER00000044470 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8338738:8344715:1 9/11 None
C34B7.1 ENSEMBL cdna:known chromosome:CEL140:I:8338676:8340843:1 gene:C34B7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044467 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8340432-8340760(+) 98.57 98.57
Public Domain and Genome References
Gene Title
Ensembl C34B7.1
Entrez Gene 172618 Entrez gene
SwissProt P90769 EMBL-EBI
WormBase CE27817 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05700 Hypothetical protein C34B7.1 [Caenorhabditis elegans] ref|NP_492264.1| C34B7.1 [Caenorhabditis elegans] 0.0
blast CAE60468 Hypothetical protein CBG04079 [Caenorhabditis briggsae] 0.0
blast CAC42264 Hypothetical protein C34B7.4 [Caenorhabditis elegans] ref|NP_492265.1| C34B7.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002717 EMBL-EBI MOZ/SAS-like protein 2.9E-78
Sequence
Target Sequence 
>C. ELEGANS:175103_S_AT
gatcctacgaaatcaacagtgaaaaaatcgtgtgcaacaacgtcgattctgagttttcca
gataattctgcgtatacaaatattaatcattgtcagtataaaatggctggttccattcaa
acagctataaaagcatgcaacacatcattttgcaacacggcatgctctgacataccactt
ccaactcctgctccacaaaattcggtttcatcaaaagtttgcaacgctgaaatattaata
actctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCTACGAAATCAACAGTGAAAA 406 415 16 Antisense
TCGTGTGCAACAACGTCGATTCTGA 457 605 43 Antisense
AACAACGTCGATTCTGAGTTTTCCA 652 133 51 Antisense
GAGTTTTCCAGATAATTCTGCGTAT 174 399 66 Antisense
AATTCTGCGTATACAAATATTAATC 301 177 79 Antisense
ATGGCTGGTTCCATTCAAACAGCTA 638 51 118 Antisense
GCTATAAAAGCATGCAACACATCAT 96 303 139 Antisense
CAACACATCATTTTGCAACACGGCA 352 189 153 Antisense
TGCAACACGGCATGCTCTGACATAC 73 577 166 Antisense
TTCATCAAAAGTTTGCAACGCTGAA 581 681 222 Antisense
AACGCTGAAATATTAATAACTCTGC 600 145 238 Antisense
Sequence Source Affymetrix Proprietary Database