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[175102_at]

Description AU109149 /REP_DB=TREMBL Accession /GB=AU109149 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk703g6 : 5prime end, single read.
Cluster 6grp_total > 94      4grp_total > 32      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 1
(-3)
A 		5.6
(-2.1)
A 		30.6
(3)
A 		26.5
(2.2)
A 		30
B 8.2
(-2.4)
A 		6.2
(-3)
A 		26
(3)
A 		8.2
(-2.4)
A 		20
C 13.9
(-1.2)
A 		10.2
(-3)
A 		13.8
(-1.3)
A 		22.8
(3)
A 		13
avr 7.7
(-2.9) 		7.3
(-3) 		23.5
(3) 		19.2
(1.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 474
1 2 3 4 5 6 range
A 29.9
(-2.7)
A 		8.9
(-3)
A 		35.2
(-2.6)
A 		6.2
(-3)
A 		447
(3)
P 		165.8
(-0.8)
P 		441
B 21
(-2.8)
A 		2.1
(-3)
A 		6.6
(-2.9)
A 		42.9
(-2.5)
A 		475.7
(3)
P 		204.5
(-0.4)
P 		474
C 2.9
(-3)
A 		2.1
(-3)
A 		4.7
(-3)
A 		51.7
(-2.1)
A 		323.2
(3)
P 		250.2
(1.6)
P 		321
avr 17.9
(-2.8) 		4.4
(-3) 		15.5
(-2.8) 		33.6
(-2.6) 		415.3
(3) 		206.8
(-0) 		411
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.4
(-3)
A 		1.2
(-2.4)
A 		8
(3)
A 		3.9
(-0.2)
A 		8
B 2.6
(-1.5)
A 		1.5
(-3)
A 		6
(3)
A 		1.8
(-2.6)
A 		5
C 4.6
(2.4)
A 		2.9
(-3)
A 		4.8
(3)
A 		3.8
(-0.2)
A 		2
avr 2.5
(-2.2) 		1.9
(-3) 		6.3
(3) 		3.2
(-1.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 5.5
(-2.8)
A 		3.2
(-2.9)
A 		7.7
(-2.7)
A 		1.6
(-3)
A 		134.9
(3)
P 		40.4
(-1.3)
P 		133
B 7.3
(-2.8)
A 		0.7
(-3)
A 		1.6
(-3)
A 		11.4
(-2.7)
A 		193.3
(3)
P 		76.2
(-0.6)
P 		193
C 1.1
(-3)
A 		0.6
(-3)
A 		1.2
(-3)
A 		10.4
(-2.4)
A 		104.6
(3)
P 		83.8
(1.8)
P 		104
avr 4.6
(-2.9) 		1.5
(-3) 		3.5
(-2.9) 		7.8
(-2.7) 		144.3
(3) 		66.8
(-0.3) 		143
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175102_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20490
Sequence Type Exemplar sequence
Representative Public ID AU109149 NCBI
Target Description AU109149 /REP_DB=TREMBL Accession /GB=AU109149 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk703g6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064622(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064622 NCBI Caenorhabditis elegans C04H5.7 (C04H5.7) mRNA, complete cds. 11/11 None
C04H5.7 ENSEMBL cdna:known chromosome:CEL140:II:14537882:14538245:1 gene:C04H5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14537888-14538211(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04H5.7
Entrez Gene 175115 Entrez gene
SwissProt Q95QX9 EMBL-EBI
WormBase CE27793 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42248 Hypothetical protein C04H5.7 [Caenorhabditis elegans] ref|NP_497023.1| C04H5.7 [Caenorhabditis elegans] 7.0E-11
Sequence
Target Sequence 
>C. ELEGANS:175102_AT
ttattttcgtcctattattcctgttaaccatcaatgtgttggctgaaagtcacgaaagtc
atgaaaattccggacgagttagtgtcatgtcctctgaaaaactttggactggtaggattt
ggattttcatgcgatgaccatcaatgtaaaagcgattgcaccgacaaaatgtcacccttg
acgtctttttttgcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTTTCGTCCTATTATTCCTGTT 651 677 25 Antisense
CGTCCTATTATTCCTGTTAACCATC 354 245 32 Antisense
GTTAACCATCAATGTGTTGGCTGAA 529 445 47 Antisense
GTTGGCTGAAAGTCACGAAAGTCAT 332 431 62 Antisense
GACGAGTTAGTGTCATGTCCTCTGA 245 379 97 Antisense
GTGTCATGTCCTCTGAAAAACTTTG 29 487 106 Antisense
GGACTGGTAGGATTTGGATTTTCAT 69 525 130 Antisense
ATTTTCATGCGATGACCATCAATGT 374 15 147 Antisense
AATGTAAAAGCGATTGCACCGACAA 404 163 167 Antisense
TGCACCGACAAAATGTCACCCTTGA 53 577 181 Antisense
CACCCTTGACGTCTTTTTTTGCAAT 577 199 197 Antisense
Sequence Source Affymetrix Proprietary Database