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[175101_s_at]

Description AU111466 /REP_DB=TREMBL Accession /GB=AU111466 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk730c1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 65      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 90      6grp_total > 67      4grp_total > 05      6grp_highest_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 157
(0.7)
P 		80.4
(-3)
P 		106.9
(-1.7)
P 		203.4
(3)
P 		123
B 137.8
(-1.1)
P 		84.6
(-3)
P 		97
(-2.6)
P 		256.2
(3)
P 		172
C 142.2
(-1.6)
P 		69.8
(-3)
P 		92.4
(-2.6)
P 		383.8
(3)
P 		314
avr 145.7
(-1) 		78.3
(-3) 		98.8
(-2.4) 		281.1
(3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 119.8
(3)
P 		104.5
(-3)
P 		117.8
(2.2)
P 		105.4
(-2.6)
P 		109.4
(-1.1)
P 		106.8
(-2.1)
P 		15
B 87.2
(-3)
P 		123.5
(2.7)
P 		122.9
(2.6)
P 		119.5
(2.1)
P 		125.4
(3)
P 		110.1
(0.6)
P 		38
C 133.6
(1)
P 		101.1
(-2.3)
P 		110
(-1.4)
P 		106.7
(-1.8)
P 		94.7
(-3)
P 		152.8
(3)
P 		58
avr 113.5
(-1.3) 		109.7
(-3) 		116.9
(0.2) 		110.5
(-2.6) 		109.8
(-3) 		123.2
(3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 57.2
(3)
P 		17.5
(-3)
P 		27.9
(-1.4)
P 		29.8
(-1.1)
P 		40
B 43.9
(1.1)
P 		20.9
(-3)
P 		22.5
(-2.7)
P 		54.6
(3)
P 		34
C 47.1
(0.6)
P 		20.1
(-3)
P 		32.2
(-1.4)
P 		64.7
(3)
P 		45
avr 49.4
(2.9) 		19.5
(-3) 		27.5
(-1.4) 		49.7
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 22.1
(-3)
P 		37.2
(3)
P 		25.7
(-1.6)
P 		26.7
(-1.2)
P 		33
(1.3)
P 		26
(-1.5)
P 		15
B 30.3
(-2.9)
P 		41.1
(0.2)
P 		29.8
(-3)
P 		31.7
(-2.5)
P 		50.9
(3)
P 		41.1
(0.2)
P 		21
C 49.5
(2.7)
P 		30.8
(-1.1)
P 		28
(-1.7)
P 		21.5
(-3)
P 		30.6
(-1.2)
P 		51.2
(3)
P 		30
avr 34
(0.5) 		36.4
(1.6) 		27.8
(-2.4) 		26.6
(-3) 		38.2
(2.4) 		39.4
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175101_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20266
Sequence Type Exemplar sequence
Representative Public ID AU111466 NCBI
Target Description AU111466 /REP_DB=TREMBL Accession /GB=AU111466 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk730c1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059813(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059813 NCBI Caenorhabditis elegans K04G2.11 (K04G2.11) mRNA, complete cds. 11/11 None
SNAP00000009073 ENSEMBL cdna:SNAP chromosome:CEL140:I:8045310:8051693:-1 11/11 None
GENEFINDER00000009096 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8045310:8048646:-1 11/11 None
K04G2.11 ENSEMBL cdna:known chromosome:CEL140:I:8048040:8048652:-1 gene:K04G2.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8048014-8048387(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04G2.11
Entrez Gene 172588 Entrez gene
SwissProt Q95ZR7 EMBL-EBI
WormBase CE27389 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00042 Hypothetical protein K04G2.5 [Caenorhabditis elegans] ref|NP_492213.1| K04G2.5 [Caenorhabditis elegans] 1.0E-128
blast AAU01163 acyl protein thioesterase 1 [Caenorhabditis elegans] gb|AAU01162.1| acyl protein thioesterase 1 [Caenorhabditis elegans] 1.0E-121
blast CAE63703 Hypothetical protein CBG08218 [Caenorhabditis briggsae] 1.0E-101
blast CAC42321 Hypothetical protein K04G2.11 [Caenorhabditis elegans] ref|NP_492214.1| K04G2.11 [Caenorhabditis elegans] 5.0E-43
blast CAE63704 Hypothetical protein CBG08219 [Caenorhabditis briggsae] 1.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR004038 EMBL-EBI Ribosomal protein L7Ae/L30e/S12e/Gadd45 5.3E-5
Pfam IPR003140 EMBL-EBI Phospholipase/Carboxylesterase 4.9E-120
Pfam IPR004038 EMBL-EBI Ribosomal protein L7Ae/L30e/S12e/Gadd45 4.5E-7
Pfam IPR003140 EMBL-EBI Phospholipase/Carboxylesterase 4.9E-120
Sequence
Target Sequence 
>C. ELEGANS:175101_S_AT
ggacgagaataatttaagagctgcttcgaatttccattctctacaaattgtctgtcctct
cgcaggaataccgatgatcgaggtgttaacgagaaaggaattgtctcgaattatgaacaa
atttccatacgttgctgttgtcggagttatcgatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGAGAATAATTTAAGAGCTGCT 93 523 80 Antisense
AAGAGCTGCTTCGAATTTCCATTCT 190 155 95 Antisense
TGCTTCGAATTTCCATTCTCTACAA 516 579 101 Antisense
TTCTCTACAAATTGTCTGTCCTCTC 668 691 116 Antisense
TCTGTCCTCTCGCAGGAATACCGAT 7 607 130 Antisense
CCTCTCGCAGGAATACCGATGATCG 22 269 135 Antisense
ATACCGATGATCGAGGTGTTAACGA 376 21 147 Antisense
AAGGAATTGTCTCGAATTATGAACA 517 159 174 Antisense
AATTTCCATACGTTGCTGTTGTCGG 366 175 199 Antisense
TACGTTGCTGTTGTCGGAGTTATCG 462 647 207 Antisense
TGCTGTTGTCGGAGTTATCGATTTC 207 579 212 Antisense
Sequence Source Affymetrix Proprietary Database