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[175100_s_at] ribosomal protein

Description AV191236 /REP_DB=TREMBL Accession /GB=AV191236 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk591e8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 40      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 19      6grp_total > 51      4grp_total > 17      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15381
1 2 3 4 range
A 22784.8
(-3)
P 		30453.6
(0.8)
P 		29910.4
(0.5)
P 		34899.6
(3)
P 		12115
B 24084.3
(-2.4)
P 		23751.1
(-2.6)
P 		23122.7
(-3)
P 		32218.9
(3)
P 		9096
C 21139.5
(-3)
P 		22326.3
(-2.5)
P 		23303.2
(-2.2)
P 		36520.4
(3)
P 		15381
avr 22669.5
(-3) 		25510.3
(-1.6) 		25445.4
(-1.6) 		34546.3
(3) 		11877

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6561
1 2 3 4 5 6 range
A 22469.5
(1.1)
P 		17970.3
(-3)
P 		24531.1
(3)
P 		21515
(0.2)
P 		19557.9
(-1.5)
P 		20018.1
(-1.1)
P 		6561
B 18705.2
(-2.6)
P 		21601.6
(1)
P 		23185.4
(3)
P 		19777
(-1.3)
P 		18419.4
(-3)
P 		18448.4
(-3)
P 		4766
C 19359
(-2.5)
P 		22541.7
(3)
P 		21433.7
(1.1)
P 		22484.2
(2.9)
P 		19069.2
(-3)
P 		19386.8
(-2.5)
P 		3473
avr 20177.9
(-1.3) 		20704.5
(-0.5) 		23050.1
(3) 		21258.7
(0.3) 		19015.5
(-3) 		19284.4
(-2.6) 		4035
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3187
1 2 3 4 range
A 8295.9
(3)
P 		6610.7
(-0.2)
P 		7819.2
(2.1)
P 		5108.6
(-3)
P 		3187
B 7680.3
(3)
P 		5866
(-1.7)
P 		5358.1
(-3)
P 		6865.9
(0.9)
P 		2322
C 6997.8
(-0.4)
P 		6418.9
(-2.2)
P 		8121.9
(3)
P 		6157.9
(-3)
P 		1964
avr 7658
(3) 		6298.5
(-2.1) 		7099.7
(0.9) 		6044.1
(-3) 		1614

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3342
1 2 3 4 5 6 range
A 4142.1
(-3)
P 		6391.1
(3)
P 		5342.4
(0.2)
P 		5456.7
(0.5)
P 		5901.7
(1.7)
P 		4873.8
(-1)
P 		2249
B 6508.5
(0.4)
P 		7190.3
(2.2)
P 		5630.1
(-2)
P 		5238.2
(-3)
P 		7483.6
(3)
P 		6879.3
(1.4)
P 		2245
C 7175.5
(3)
P 		6878.1
(2.3)
P 		5455.2
(-0.9)
P 		4521.6
(-3)
P 		6170.5
(0.7)
P 		6489.9
(1.4)
P 		2654
avr 5942
(-0) 		6819.8
(3) 		5475.9
(-1.6) 		5072.2
(-3) 		6518.6
(2) 		6081
(0.5) 		1748
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175100_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21538
Sequence Type Exemplar sequence
Representative Public ID AV191236 NCBI
Target Description AV191236 /REP_DB=TREMBL Accession /GB=AV191236 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk591e8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067514(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067514 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-24) (rps-24) mRNA, complete cds. 11/11 A 
SNAP00000017755 ENSEMBL cdna:SNAP chromosome:CEL140:IV:385909:387606:1 11/11 None
GENEFINDER00000017776 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:385909:387606:1 11/11 None
T07A9.11.3 ENSEMBL cdna:known chromosome:CEL140:IV:385887:387893:1 gene:T07A9.11 11/11 None
T07A9.11.2 ENSEMBL cdna:known chromosome:CEL140:IV:385887:387893:1 gene:T07A9.11 11/11 None
T07A9.11.1 ENSEMBL cdna:known chromosome:CEL140:IV:385894:387893:1 gene:T07A9.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:386103-386586(+) 100.0 100.0
Public Domain and Genome References
Gene Title ribosomal protein
Gene Symbol rps-24
Ensembl T07A9.11
Entrez Gene 176858 Entrez gene
SwissProt O44414 EMBL-EBI
WormBase CE29465 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246730_AT 40S ribosomal protein S24 (RPS24B) at
CANINE:1583302_S_AT similar to ribosomal protein S24 isoform 3 cfa
CANINE:1605923_AT similar to ribosomal protein S24 isoform 3 cfa
CANINE:1590546_AT similar to ribosomal protein S24 isoform 3 cfa
CANINE_2:CFA.754.2.S1_A_AT similar to ribosomal protein S24 isoform 3 cfa
CANINE_2:CFA.754.2.S1_X_AT similar to ribosomal protein S24 isoform 3 cfa
CANINE_2:CFAAFFX.12877.1.S1_X_AT similar to ribosomal protein S24 isoform 3 cfa
CANINE_2:CFAAFFX.13230.1.S1_AT similar to ribosomal protein S24 isoform 3 cfa
CANINE_2:CFAAFFX.19842.1.S1_X_AT similar to ribosomal protein S24 isoform 3 cfa
CANINE_2:CFAAFFX.23922.1.S1_X_AT similar to ribosomal protein S24 isoform 3 cfa
CANINE:1589016_AT similar to ribosomal protein S24 isoform 3 cfa
DROSOPHILA_2:1630093_AT Ribosomal protein S24 dm
DROSGENOME1:153994_AT Ribosomal protein S24 dm
CHICKEN:GGA.3877.1.S1_A_AT ribosomal protein S24 gga
CHICKEN:GGAAFFX.21286.1.S1_S_AT Similar to ribosomal protein S24 gga
PLASMODIUM_ANOPHELES:200061_S_AT ribosomal protein S24 hs
HG-U133A:200061_S_AT ribosomal protein S24 hs
HG-U133B:200061_S_AT ribosomal protein S24 hs
HG-U133_PLUS_2:200061_S_AT ribosomal protein S24 hs
HG-FOCUS:200061_S_AT ribosomal protein S24 hs
HG-U133A_2:200061_S_AT ribosomal protein S24 hs
U133_X3P:200061_S_AT ribosomal protein S24 hs
HG-U95AV2:32315_AT ribosomal protein S24 hs
HU35KSUBD:RC_C14089_F_AT ribosomal protein S24 hs
HUGENEFL:M31520_AT ribosomal protein S24 hs
U133_X3P:G12653502_3P_S_AT ribosomal protein S24 hs
HG-U95C:64287_S_AT ribosomal protein S24 hs
U133_X3P:HS2.377298.1.A1_3P_AT Ribosomal protein S24 hs
U133_X3P:HS2.377298.1.A1_3P_A_AT Ribosomal protein S24 hs
U133_X3P:1555878_3P_AT Ribosomal protein S24 hs
HG-U133_PLUS_2:1555878_AT Ribosomal protein S24 hs
HG-U95E:78185_AT Ribosomal protein S24 hs
MOE430A:1453362_X_AT ribosomal protein S24 mm
MOUSE430A_2:1453362_X_AT ribosomal protein S24 mm
MOUSE430_2:1453362_X_AT ribosomal protein S24 mm
MOE430A:1428530_X_AT ribosomal protein S24 mm
MOUSE430A_2:1428530_X_AT ribosomal protein S24 mm
MOUSE430_2:1428530_X_AT ribosomal protein S24 mm
MU11KSUBB:X60289_F_AT ribosomal protein S24 mm
MOE430A:1455195_AT ribosomal protein S24 mm
MOUSE430A_2:1455195_AT ribosomal protein S24 mm
MOUSE430_2:1455195_AT ribosomal protein S24 mm
MOE430A:1436064_X_AT ribosomal protein S24 mm
MOUSE430A_2:1436064_X_AT ribosomal protein S24 mm
MOUSE430_2:1436064_X_AT ribosomal protein S24 mm
MOE430A:1456628_X_AT ribosomal protein S24 mm
MOUSE430A_2:1456628_X_AT ribosomal protein S24 mm
MOUSE430_2:1456628_X_AT ribosomal protein S24 mm
MG-U74AV2:93121_AT ribosomal protein S24 mm
MOE430A:1436500_AT Ribosomal protein S24 (Rps24), transcript variant 1, mRNA mm
MOUSE430A_2:1436500_AT Ribosomal protein S24 (Rps24), transcript variant 1, mRNA mm
MOUSE430_2:1436500_AT Ribosomal protein S24 (Rps24), transcript variant 1, mRNA mm
MU19KSUBA:TC19821_AT Ribosomal protein S24 (Rps24), transcript variant 1, mRNA mm
MU19KSUBA:TC19823_F_AT Ribosomal protein S24 (Rps24), transcript variant 1, mRNA mm
MU19KSUBA:TC19824_AT Ribosomal protein S24 (Rps24), transcript variant 1, mRNA mm
MU19KSUBA:TC19824_G_AT Ribosomal protein S24 (Rps24), transcript variant 1, mRNA mm
MU19KSUBB:TC34917_F_AT Ribosomal protein S24 (Rps24), transcript variant 1, mRNA mm
MU19KSUBB:TC34945_F_AT Ribosomal protein S24 (Rps24), transcript variant 1, mRNA mm
MU19KSUBB:TC34945_I_AT Ribosomal protein S24 (Rps24), transcript variant 1, mRNA mm
MU19KSUBC:TC38224_AT Ribosomal protein S24 (Rps24), transcript variant 1, mRNA mm
RG-U34A:M89646_G_AT ribosomal protein S24 rn
RG-U34B:RC_AA956859_S_AT ribosomal protein S24 rn
RG-U34C:RC_AI177484_AT ribosomal protein S24 rn
RAE230A:1390494_AT ribosomal protein S24 rn
RAT230_2:1390494_AT ribosomal protein S24 rn
RAE230A:1369966_A_AT ribosomal protein S24 rn
RAT230_2:1369966_A_AT ribosomal protein S24 rn
RG-U34A:M89646_AT Ribosomal protein S24 rn
YEAST_2:1771497_AT Protein component of the small (40S) ribosomal subunit; identical to Rps24Ap and has similarity to rat S24 ribosomal protein Sc
YEAST_2:1776365_S_AT Protein component of the small (40S) ribosomal subunit; identical to Rps24Ap and has similarity to rat S24 ribosomal protein Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39283 Ribosomal protein, small subunit protein 24 [Caenorhabditis elegans] ref|NP_499915.1| Ribosomal Protein, Small subunit family member (rps-24) [Caenorhabditis elegans] 1.0E-111
blast T32583 hypothetical protein T07A9.11 - Caenorhabditis elegans 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR001976 EMBL-EBI Ribosomal protein S24e 9.9E-43
Sequence
Target Sequence 
>C. ELEGANS:175100_S_AT
tccaactgtcccgaaggctgatatccgtgaaaagatcgccaagctttataagaccactcc
agacacggttatcccattcggattcgaatccaagatcggaggaggaaagtcgaaggggtt
cgctctcgtatacgacacgattgacttcgccaagaagtttgagccgaagtacagactcgt
tcgcatgggacttgccaccaaggtcgagaagccaggacgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAACTGTCCCGAAGGCTGATATC 659 587 29 Antisense
TGTCCCGAAGGCTGATATCCGTGAA 194 557 35 Antisense
GCTGATATCCGTGAAAAGATCGCCA 471 295 45 Antisense
GATCGCCAAGCTTTATAAGACCACT 202 415 62 Antisense
GAAAGTCGAAGGGGTTCGCTCTCGT 185 359 133 Antisense
AGTCGAAGGGGTTCGCTCTCGTATA 282 61 136 Antisense
TATACGACACGATTGACTTCGCCAA 639 659 157 Antisense
ACGACACGATTGACTTCGCCAAGAA 249 91 160 Antisense
TCGCCAAGAAGTTTGAGCCGAAGTA 384 599 175 Antisense
GACTTGCCACCAAGGTCGAGAAGCC 640 371 217 Antisense
CCAAGGTCGAGAAGCCAGGACGCAA 647 275 226 Antisense
Sequence Source Affymetrix Proprietary Database