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[175098_s_at] DNAJ protein

Description AV186674 /REP_DB=TREMBL Accession /GB=AV186674 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk502g3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 66      6grp_total > 24      4grp_total > 31      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1012
1 2 3 4 range
A 1868.2
(3)
P 		1365.8
(-2.9)
P 		1357.6
(-3)
P 		1404.4
(-2.5)
P 		511
B 1929.3
(3)
P 		1030
(-2.9)
P 		1022
(-3)
P 		1750
(1.8)
P 		907
C 1738.7
(3)
P 		917.2
(-3)
P 		1222
(-0.8)
P 		1483.9
(1.1)
P 		822
avr 1845.4
(3) 		1104.3
(-3) 		1200.5
(-2.2) 		1546.1
(0.6) 		741

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 961
1 2 3 4 5 6 range
A 2062.1
(3)
P 		1843.8
(1.5)
P 		1290.6
(-2.4)
P 		1202.1
(-3)
P 		1403.3
(-1.6)
P 		1424.4
(-1.4)
P 		860
B 1824.7
(1.9)
P 		1523.3
(-0.1)
P 		1901.9
(2.5)
P 		1980.6
(3)
P 		1101.1
(-3)
P 		1459.1
(-0.6)
P 		880
C 1578.4
(1.2)
P 		1370.3
(-1.2)
P 		1732.8
(3)
P 		1294.1
(-2)
P 		1211.1
(-3)
P 		1361.8
(-1.3)
P 		522
avr 1821.7
(3) 		1579.1
(0.5) 		1641.8
(1.1) 		1492.3
(-0.4) 		1238.5
(-3) 		1415.1
(-1.2) 		583
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 475
1 2 3 4 range
A 680.2
(3)
P 		296.5
(-1.9)
P 		354.9
(-1.1)
P 		205.6
(-3)
P 		475
B 615.2
(3)
P 		254.4
(-2.7)
P 		236.8
(-3)
P 		372.9
(-0.8)
P 		378
C 575.6
(3)
P 		263.7
(-2.8)
P 		425.9
(0.2)
P 		250.2
(-3)
P 		325
avr 623.7
(3) 		271.5
(-3) 		339.2
(-1.8) 		276.2
(-2.9) 		352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 396
1 2 3 4 5 6 range
A 380.1
(-1.4)
P 		655.7
(3)
P 		281.1
(-3)
P 		304.9
(-2.6)
P 		423.5
(-0.7)
P 		346.8
(-1.9)
P 		375
B 634.9
(3)
P 		507
(-1.1)
P 		461.8
(-2.5)
P 		524.6
(-0.5)
P 		447.4
(-3)
P 		544.1
(0.1)
P 		188
C 585
(3)
P 		418.1
(-0.1)
P 		441
(0.3)
P 		260.2
(-3)
P 		391.9
(-0.6)
P 		455.9
(0.6)
P 		325
avr 533.3
(3) 		526.9
(2.8) 		394.6
(-1.9) 		363.2
(-3) 		420.9
(-1) 		448.9
(0) 		170
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175098_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20795
Sequence Type Exemplar sequence
Representative Public ID AV186674 NCBI
Target Description AV186674 /REP_DB=TREMBL Accession /GB=AV186674 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk502g3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062940(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062940 NCBI Caenorhabditis elegans C56C10.11 (C56C10.11) mRNA, complete cds. 11/11 None
GENEFINDER00000022085 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6598509:6601064:-1 11/11 None
C56C10.11 ENSEMBL cdna:known chromosome:CEL140:II:6598294:6601064:-1 gene:C56C10.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6598348-6598638(-) 100.0 100.0
Public Domain and Genome References
Gene Title DNAJ protein
Ensembl C56C10.11
Entrez Gene 174094 Entrez gene
SwissProt Q18889 EMBL-EBI
WormBase CE28900 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK93842 Hypothetical protein C56C10.11 [Caenorhabditis elegans] ref|NP_495341.1| C56C10.11 [Caenorhabditis elegans] 0.0
blast T15851 hypothetical protein C56C10.11 - Caenorhabditis elegans 0.0
blast CAE60662 Hypothetical protein CBG04315 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175098_S_AT
gcaatgcattcaacaaagccaccgcatattttgtacagatcgagactcatcgcatccaat
catcgcccaaattgcttctcgaaataggtcgatccgcgtttggagatcttttccttactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATGCATTCAACAAAGCCACCGC 32 323 18 Antisense
ATTCAACAAAGCCACCGCATATTTT 101 13 25 Antisense
CCGCATATTTTGTACAGATCGAGAC 282 261 39 Antisense
GTACAGATCGAGACTCATCGCATCC 629 459 50 Antisense
TCGAGACTCATCGCATCCAATCATC 398 601 57 Antisense
CATCCAATCATCGCCCAAATTGCTT 521 211 70 Antisense
AATCATCGCCCAAATTGCTTCTCGA 342 171 75 Antisense
CATCGCCCAAATTGCTTCTCGAAAT 571 211 78 Antisense
GCTTCTCGAAATAGGTCGATCCGCG 114 307 91 Antisense
AATAGGTCGATCCGCGTTTGGAGAT 247 161 100 Antisense
GCGTTTGGAGATCTTTTCCTTACTG 307 291 113 Antisense
Sequence Source Affymetrix Proprietary Database