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[175097_at] DNAJ protein

Description AV186674 /REP_DB=TREMBL Accession /GB=AV186674 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk502g3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 07      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 76      6grp_total > 04      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 482
1 2 3 4 range
A 1196.3
(3)
P 		822.8
(-3)
P 		957
(-0.8)
P 		892.4
(-1.9)
P 		374
B 872
(-0.1)
P 		972.7
(1.7)
P 		713.9
(-3)
P 		1041.4
(3)
P 		328
C 1149.5
(3)
P 		857.5
(-1.3)
P 		738.2
(-3)
P 		1096.8
(2.2)
P 		411
avr 1072.6
(3) 		884.3
(-1.2) 		803
(-3) 		1010.2
(1.6) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1024
1 2 3 4 5 6 range
A 1700.6
(3)
P 		1213.1
(-1)
P 		963.4
(-3)
P 		1077.9
(-2.1)
P 		1487.5
(1.3)
P 		1173.2
(-1.3)
P 		737
B 1360.3
(1.5)
P 		1298.9
(1.1)
P 		754.9
(-2.5)
P 		1585.9
(3)
P 		676.4
(-3)
P 		1076
(-0.4)
P 		910
C 1162.7
(0.6)
P 		1285.6
(1.9)
P 		1386.1
(3)
P 		988.2
(-1.3)
P 		967.4
(-1.5)
P 		824.4
(-3)
P 		562
avr 1407.9
(3) 		1265.9
(0.8) 		1034.8
(-2.8) 		1217.3
(0) 		1043.8
(-2.7) 		1024.5
(-3) 		383
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 435.6
(3)
P 		178.6
(-2.1)
P 		250.2
(-0.6)
P 		130.6
(-3)
P 		305
B 278.1
(3)
P 		240.2
(1)
P 		165.4
(-3)
P 		221.9
(0)
P 		113
C 380.5
(3)
P 		246.5
(-1.1)
P 		257.3
(-0.8)
P 		184.9
(-3)
P 		196
avr 364.7
(3) 		221.8
(-1.6) 		224.3
(-1.5) 		179.1
(-3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 313.5
(-0.4)
P 		431.4
(2.6)
P 		209.8
(-3)
P 		273.4
(-1.4)
P 		448.9
(3)
P 		285.6
(-1.1)
P 		239
B 473.3
(3)
P 		432.4
(2.2)
P 		183.3
(-3)
P 		420.1
(1.9)
P 		274.8
(-1.1)
P 		401.2
(1.5)
P 		290
C 431
(3)
P 		392.3
(2)
P 		352.8
(1)
P 		198.7
(-3)
P 		313
(-0)
P 		276
(-1)
P 		232
avr 405.9
(2.5) 		418.7
(3) 		248.6
(-3) 		297.4
(-1.3) 		345.6
(0.4) 		320.9
(-0.4) 		170
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20795
Sequence Type Exemplar sequence
Representative Public ID AV186674 NCBI
Target Description AV186674 /REP_DB=TREMBL Accession /GB=AV186674 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk502g3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062940(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062940 NCBI Caenorhabditis elegans C56C10.11 (C56C10.11) mRNA, complete cds. 11/11 None
C56C10.11 ENSEMBL cdna:known chromosome:CEL140:II:6598294:6601064:-1 gene:C56C10.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6598348-6598638(-) 100.0 100.0
Public Domain and Genome References
Gene Title DNAJ protein
Ensembl C56C10.11
Entrez Gene 174094 Entrez gene
SwissProt Q18889 EMBL-EBI
WormBase CE28900 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK93842 Hypothetical protein C56C10.11 [Caenorhabditis elegans] ref|NP_495341.1| C56C10.11 [Caenorhabditis elegans] 0.0
blast T15851 hypothetical protein C56C10.11 - Caenorhabditis elegans 0.0
blast CAE60662 Hypothetical protein CBG04315 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175097_AT
cttttccttactgatgtataattgtatcctatttttctttgatttccccattctttactc
attttctggatcccattcactacttttatgtgacagcaaataacgggtttcctgctcacc
gattcatttgtgttccctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTTCCTTACTGATGTATAATTGT 79 223 125 Antisense
GATGTATAATTGTATCCTATTTTTC 289 409 137 Antisense
TCCTATTTTTCTTTGATTTCCCCAT 183 593 151 Antisense
ATTTTCTGGATCCCATTCACTACTT 349 15 185 Antisense
TTTCTGGATCCCATTCACTACTTTT 309 671 187 Antisense
CATTCACTACTTTTATGTGACAGCA 61 217 198 Antisense
TGTGACAGCAAATAACGGGTTTCCT 197 533 213 Antisense
GCAAATAACGGGTTTCCTGCTCACC 313 317 220 Antisense
TTCCTGCTCACCGATTCATTTGTGT 678 697 233 Antisense
TGCTCACCGATTCATTTGTGTTCCC 291 581 237 Antisense
TCACCGATTCATTTGTGTTCCCTCA 454 625 240 Antisense
Sequence Source Affymetrix Proprietary Database