[Home] | [Total List]

[175095_at]

Description AU111116 /REP_DB=TREMBL Accession /GB=AU111116 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk724b1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 81      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 45      6grp_total > 83      4grp_total > 17      6grp_highest_sub > 05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5010
1 2 3 4 range
A 629.6
(-3)
P 		1594.3
(-1.6)
P 		1350
(-2)
P 		4835.4
(3)
P 		4206
B 653.3
(-3)
P 		1445.2
(-2)
P 		1489.2
(-2)
P 		5640
(3)
P 		4987
C 656.5
(-3)
P 		1472.4
(-1.9)
P 		1415.1
(-2)
P 		4997.4
(3)
P 		4341
avr 646.5
(-3) 		1504
(-1.9) 		1418.1
(-2) 		5157.6
(3) 		4511

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2636
1 2 3 4 5 6 range
A 1461.4
(-3)
P 		1753.4
(-2.3)
P 		2267.8
(-0.9)
P 		2773.4
(0.4)
P 		3808.9
(3)
P 		1618.8
(-2.6)
P 		2348
B 1404.9
(-3)
P 		2358.3
(-0.5)
P 		2604.6
(0.1)
P 		2889.8
(0.9)
P 		3698
(3)
P 		2006.5
(-1.4)
P 		2293
C 1181.8
(-3)
P 		2255.6
(-0.6)
P 		2018.5
(-1.1)
P 		3818.1
(3)
P 		3109.3
(1.4)
P 		1892.6
(-1.4)
P 		2636
avr 1349.4
(-3) 		2122.4
(-0.9) 		2297
(-0.4) 		3160.4
(2) 		3538.7
(3) 		1839.3
(-1.7) 		2189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 994
1 2 3 4 range
A 229.2
(-3)
P 		346.1
(-1.5)
P 		352.9
(-1.4)
P 		707.8
(3)
P 		479
B 208.3
(-3)
P 		356.9
(-2.1)
P 		345.1
(-2.2)
P 		1201.9
(3)
P 		994
C 217.3
(-3)
P 		423.3
(-1)
P 		493.2
(-0.4)
P 		842.6
(3)
P 		625
avr 218.3
(-3) 		375.4
(-1.7) 		397.1
(-1.5) 		917.4
(3) 		699

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1233
1 2 3 4 5 6 range
A 269.4
(-3)
P 		623.6
(-0.6)
P 		493.9
(-1.5)
P 		703.4
(-0)
P 		1149.4
(3)
P 		394.1
(-2.1)
P 		880
B 488.8
(-3)
P 		785
(-1.2)
P 		632.5
(-2.1)
P 		765.4
(-1.4)
P 		1502.4
(3)
P 		748.2
(-1.5)
P 		1014
C 438
(-3)
P 		688.3
(-0.4)
P 		513.7
(-2.2)
P 		767.8
(0.5)
P 		1006.1
(3)
P 		633.5
(-0.9)
P 		568
avr 398.7
(-3) 		699
(-0.8) 		546.7
(-1.9) 		745.5
(-0.5) 		1219.3
(3) 		591.9
(-1.6) 		821
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22421
Sequence Type Exemplar sequence
Representative Public ID AU111116 NCBI
Target Description AU111116 /REP_DB=TREMBL Accession /GB=AU111116 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk724b1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076101(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076101 NCBI Caenorhabditis elegans B0410.3 (B0410.3) mRNA, complete cds. 11/11 None
B0410.3 ENSEMBL cdna:known chromosome:CEL140:X:2890618:2891379:-1 gene:B0410.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001858 6/11 Cross Hyb Matching Probes None
GENEFINDER00000001862 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2890741-2891297(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0410.3
Entrez Gene 180580 Entrez gene
SwissProt Q95ZZ5 EMBL-EBI
WormBase CE28814 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84626 Hypothetical protein B0410.3 [Caenorhabditis elegans] ref|NP_508502.1| B0410.3 [Caenorhabditis elegans] 6.0E-61
blast CAE58818 Hypothetical protein CBG02028 [Caenorhabditis briggsae] 4.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508502.1 1 5-27
B0410.3 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:175095_AT
aaaatgttcgcgcagatactccgtcagattattttcttcaatctaattgtcacaatcgtc
tcgtcaatgagtcttctcgatgcctacagatctgagaaattgacgcgacgtcggatagga
atgcaaaacactgatttccgtccgattcttcatttgcgcggagaagatgattggcaaaaa
caaatcaatgacaacttctcgcccaaccagttcatggatgagaacggtattgtatatgat
atggatcccacgatcaacgacagaatttccacgtttttcaatagtcagagaatcaccagc
agtagatttggaaggaagaagagaagcttgatgttcccgagactttttgtgtaatccaac
ttaaaactatcttgttcgcattttttttcatatatccgtttccttcatttttcatagcgt
actctcgatttgacatgttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGTTCGCGCAGATACTCCGTC 60 133 33 Antisense
TTGTCACAATCGTCTCGTCAATGAG 606 701 79 Antisense
GTCAATGAGTCTTCTCGATGCCTAC 655 463 95 Antisense
AAACACTGATTTCCGTCCGATTCTT 200 129 158 Antisense
CCGTCCGATTCTTCATTTGCGCGGA 333 265 170 Antisense
TCTCGCCCAACCAGTTCATGGATGA 328 611 229 Antisense
GAAGCTTGATGTTCCCGAGACTTTT 674 341 355 Antisense
ACTATCTTGTTCGCATTTTTTTTCA 622 101 398 Antisense
TTTTTTCATATATCCGTTTCCTTCA 558 673 415 Antisense
CCGTTTCCTTCATTTTTCATAGCGT 232 265 428 Antisense
GCGTACTCTCGATTTGACATGTTCT 613 291 449 Antisense
Sequence Source Affymetrix Proprietary Database