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[175094_s_at]

Description AV196817 /REP_DB=TREMBL Accession /GB=AV196817 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk658h2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 06      6grp_total > 62      4grp_total > 12      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6696
1 2 3 4 range
A 9738.8
(-0.5)
P 		10733
(0.6)
P 		7402.1
(-3)
P 		12932.3
(3)
P 		5530
B 10660.3
(1.9)
P 		7549.6
(-3)
P 		8595.6
(-1.3)
P 		11326.1
(3)
P 		3777
C 8710.3
(-2.5)
P 		8389.1
(-2.8)
P 		8186.3
(-3)
P 		14098.4
(3)
P 		5912
avr 9703.1
(-0.9) 		8890.6
(-1.9) 		8061.3
(-3) 		12785.6
(3) 		4724

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6182
1 2 3 4 5 6 range
A 6502.1
(-3)
P 		10024.2
(0.4)
P 		12684.1
(3)
P 		12084.7
(2.4)
P 		8896
(-0.7)
P 		6790
(-2.7)
P 		6182
B 7193
(-3)
P 		7679.6
(-2.4)
P 		12187.3
(3)
P 		8943.2
(-0.9)
P 		9106.1
(-0.7)
P 		7540.9
(-2.6)
P 		4994
C 7955.8
(-2.4)
P 		7545.7
(-2.9)
P 		10457.5
(1)
P 		11985.1
(3)
P 		7563.9
(-2.9)
P 		7503.6
(-3)
P 		4482
avr 7217
(-3) 		8416.5
(-1.4) 		11776.3
(3) 		11004.3
(2) 		8522
(-1.3) 		7278.2
(-2.9) 		4559
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1681
1 2 3 4 range
A 3545.9
(3)
P 		2329.8
(-1.4)
P 		1935.1
(-2.8)
P 		1893
(-3)
P 		1653
B 3399.5
(3)
P 		1864.6
(-3)
P 		1991.8
(-2.5)
P 		2413.6
(-0.9)
P 		1535
C 2883.3
(3)
P 		2411.9
(-2.6)
P 		2853.2
(2.6)
P 		2377.2
(-3)
P 		506
avr 3276.2
(3) 		2202.1
(-3) 		2260
(-2.7) 		2227.9
(-2.9) 		1074

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2501
1 2 3 4 5 6 range
A 1198.6
(-3)
P 		3565.1
(3)
P 		2762.3
(1)
P 		3065
(1.7)
P 		2684.4
(0.8)
P 		1653.2
(-1.8)
P 		2367
B 2502.8
(-2.4)
P 		2556.2
(-2.2)
P 		2959.4
(-0.3)
P 		2368.7
(-3)
P 		3699.7
(3)
P 		2812
(-1)
P 		1331
C 2948.9
(3)
P 		2302.4
(-3)
P 		2661.6
(0.3)
P 		2410.2
(-2)
P 		2447.6
(-1.7)
P 		2511.9
(-1.1)
P 		647
avr 2216.8
(-3) 		2807.9
(1.9) 		2794.4
(1.8) 		2614.6
(0.3) 		2943.9
(3) 		2325.7
(-2.1) 		727
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175094_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20532
Sequence Type Exemplar sequence
Representative Public ID AV196817 NCBI
Target Description AV196817 /REP_DB=TREMBL Accession /GB=AV196817 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk658h2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV196817
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV196817 AV196817 /REP_DB=TREMBL Accession /GB=AV196817 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk658h2 : 5prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8784921-8785403(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175094_S_AT
catgctggcaaatgtccatttcgcgtgccgtatcgcgtggacccatggaatgactgaaat
tcagtcccacgaccacgaattcaaatacatttgaaaatgcattcttcgagaagttcaacg
aatggtcattctcgaagaaacttgttaaccagtgacagaaaaataagtttttgatcacca
tcccctaacagcaagtataccctactaatcaagacaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGCTGGCAAATGTCCATTTCGCG 306 211 69 Antisense
CCATTTCGCGTGCCGTATCGCGTGG 1 269 84 Antisense
CCGTATCGCGTGGACCCATGGAATG 389 263 96 Antisense
GTCCCACGACCACGAATTCAAATAC 41 475 132 Antisense
ACGACCACGAATTCAAATACATTTG 116 87 137 Antisense
AATGCATTCTTCGAGAAGTTCAACG 499 165 164 Antisense
AGAAGTTCAACGAATGGTCATTCTC 319 75 177 Antisense
GAATGGTCATTCTCGAAGAAACTTG 152 333 188 Antisense
CCATCCCCTAACAGCAAGTATACCC 580 269 246 Antisense
TCCCCTAACAGCAAGTATACCCTAC 596 593 249 Antisense
GTATACCCTACTAATCAAGACAAGA 225 447 263 Antisense
Sequence Source Affymetrix Proprietary Database