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[175093_at]

Description AV202131 /REP_DB=TREMBL Accession /GB=AV202131 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk546c1 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 43      6grp_total > 10      4grp_total > 49      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 258
1 2 3 4 range
A 35.3
(-3)
A 		215.9
(3)
P 		194.1
(2.3)
P 		61.5
(-2.1)
M 		181
B 32.1
(-2.4)
A 		225.9
(2.2)
P 		261
(3)
P 		7.1
(-3)
A 		254
C 3.3
(-3)
A 		205.5
(2.5)
P 		225.3
(3)
P 		35.1
(-2.1)
A 		222
avr 23.6
(-3) 		215.8
(2.7) 		226.8
(3) 		34.6
(-2.7) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 74.8
(-3)
P 		299.5
(0.7)
P 		437.9
(3)
P 		243.1
(-0.2)
P 		213.9
(-0.7)
P 		100.9
(-2.6)
P 		363
B 33.3
(-3)
P 		317.8
(3)
P 		317
(3)
P 		218
(0.9)
P 		242.9
(1.4)
P 		105.7
(-1.5)
P 		285
C 47.3
(-3)
M 		379.6
(3)
P 		163
(-0.9)
P 		251.6
(0.7)
P 		218.7
(0.1)
P 		101.2
(-2)
P 		332
avr 51.8
(-3) 		332.3
(3) 		306
(2.4) 		237.6
(1) 		225.2
(0.7) 		102.6
(-1.9) 		281
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 12.9
(-2.4)
A 		46.9
(2.5)
P 		50.7
(3)
P 		9
(-3)
M 		42
B 10.2
(-2.1)
A 		55.8
(2.5)
P 		60.5
(3)
P 		1.5
(-3)
A 		59
C 1.1
(-3)
A 		59.1
(1.5)
P 		78.5
(3)
P 		5.9
(-2.6)
A 		77
avr 8.1
(-2.7) 		53.9
(2) 		63.2
(3) 		5.5
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 13.8
(-3)
P 		106.5
(3)
P 		95.4
(2.3)
P 		61.7
(0.1)
P 		64.5
(0.3)
P 		24.6
(-2.3)
P 		93
B 11.6
(-3)
P 		105.8
(3)
P 		77
(1.2)
P 		57.7
(-0.1)
P 		98.7
(2.5)
P 		39.4
(-1.2)
P 		94
C 17.5
(-3)
M 		115.8
(3)
P 		41.5
(-1.5)
P 		50.6
(-1)
P 		70.8
(0.3)
P 		33.9
(-2)
P 		98
avr 14.3
(-3) 		109.4
(3) 		71.3
(0.6) 		56.7
(-0.3) 		78
(1) 		32.6
(-1.8) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175093_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22044
Sequence Type Exemplar sequence
Representative Public ID AV202131 NCBI
Target Description AV202131 /REP_DB=TREMBL Accession /GB=AV202131 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk546c1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076506(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076506 NCBI Caenorhabditis elegans C26B9.7 (C26B9.7) mRNA, complete cds. 11/11 None
SNAP00000015899 ENSEMBL cdna:SNAP chromosome:CEL140:X:5342313:5342703:1 11/11 None
C26B9.7 ENSEMBL cdna:known chromosome:CEL140:X:5342301:5342796:1 gene:C26B9.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000015902 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5342355-5342729(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26B9.7
Entrez Gene 180805 Entrez gene
SwissProt Q95QU8 EMBL-EBI
WormBase CE27733 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68204 Hypothetical protein C26B9.7 [Caenorhabditis elegans] ref|NP_508907.1| C26B9.7 [Caenorhabditis elegans] 3.0E-41
blast CAE68738 Hypothetical protein CBG14668 [Caenorhabditis briggsae] 4.0E-34
blast CAE68738 Hypothetical protein CBG14668 [Caenorhabditis briggsae] 9.0E-29
Sequence
Target Sequence 
>C. ELEGANS:175093_AT
gaacaacctgtaaactattatccaactttcgacaactatcctgatgttgtacccgactac
cgtttaatgccatatcctccacaaacatactcctactcgaggcagatgtggaacgggtgt
gggtgtgcaacagcaaaaacttatggtgactatataaaaacaaagcgaagatccagaagt
caaagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAACCTGTAAACTATTATCCAA 81 351 55 Antisense
AACTATTATCCAACTTTCGACAACT 225 139 67 Antisense
CCAACTTTCGACAACTATCCTGATG 190 277 76 Antisense
CCCGACTACCGTTTAATGCCATATC 416 235 106 Antisense
TACCGTTTAATGCCATATCCTCCAC 582 649 112 Antisense
CTCCACAAACATACTCCTACTCGAG 392 235 131 Antisense
AACATACTCCTACTCGAGGCAGATG 148 137 138 Antisense
GAGGCAGATGTGGAACGGGTGTGGG 634 405 153 Antisense
GAACGGGTGTGGGTGTGCAACAGCA 426 347 165 Antisense
GCAACAGCAAAAACTTATGGTGACT 655 317 181 Antisense
AAGCGAAGATCCAGAAGTCAAAGAT 388 147 217 Antisense
Sequence Source Affymetrix Proprietary Database