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[175092_s_at] bromodomain-containing protein

Description AV197150 /REP_DB=TREMBL Accession /GB=AV197150 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662g2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 20      6grp_total > 16      4grp_total > 55      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1412
1 2 3 4 range
A 1926.6
(3)
P 		514.6
(-3)
P 		748
(-2)
P 		660
(-2.4)
P 		1412
B 1760.1
(3)
P 		849.3
(-1.4)
P 		834.3
(-1.5)
P 		520.4
(-3)
P 		1240
C 1530.4
(3)
P 		526.9
(-3)
P 		576.3
(-2.7)
P 		593.4
(-2.6)
P 		1004
avr 1739
(3) 		630.3
(-2.8) 		719.5
(-2.3) 		591.3
(-3) 		1148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1505
1 2 3 4 5 6 range
A 1963.7
(3)
P 		1371.9
(0.3)
P 		815.2
(-2.3)
P 		751.7
(-2.6)
P 		663.2
(-3)
P 		898.3
(-1.9)
P 		1301
B 1974.4
(3)
P 		1174.9
(-0.2)
P 		469.8
(-3)
P 		888
(-1.3)
P 		517.3
(-2.8)
P 		629.8
(-2.4)
P 		1505
C 1547.8
(3)
P 		1413.4
(2.2)
P 		1097.9
(0.4)
P 		614.3
(-2.5)
P 		522.6
(-3)
P 		571.7
(-2.7)
P 		1025
avr 1828.6
(3) 		1320.1
(0.6) 		794.3
(-1.9) 		751.3
(-2.1) 		567.7
(-3) 		699.9
(-2.4) 		1261
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 605
1 2 3 4 range
A 701.5
(3)
P 		111.7
(-2.9)
P 		195.5
(-2)
P 		96.6
(-3)
P 		605
B 561.3
(3)
P 		209.8
(-1.7)
P 		193.3
(-1.9)
P 		110.9
(-3)
P 		450
C 506.6
(3)
P 		151.5
(-2.2)
P 		200.9
(-1.5)
P 		100.1
(-3)
P 		407
avr 589.8
(3) 		157.7
(-2.3) 		196.6
(-1.8) 		102.5
(-3) 		487

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 573
1 2 3 4 5 6 range
A 362
(0.6)
P 		487.9
(3)
P 		177.5
(-3)
P 		190.6
(-2.7)
P 		200.1
(-2.6)
P 		218.7
(-2.2)
P 		310
B 687
(3)
P 		391.1
(-0.1)
P 		114.1
(-3)
P 		235.2
(-1.7)
P 		210.2
(-2)
P 		234.9
(-1.7)
P 		573
C 573.7
(3)
P 		431.3
(1.1)
P 		279.4
(-0.9)
P 		123.5
(-3)
P 		169.1
(-2.4)
P 		191.4
(-2.1)
P 		450
avr 540.9
(3) 		436.8
(1.3) 		190.3
(-2.9) 		183.1
(-3) 		193.1
(-2.8) 		215
(-2.5) 		358
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175092_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22413
Sequence Type Exemplar sequence
Representative Public ID AV197150 NCBI
Target Description AV197150 /REP_DB=TREMBL Accession /GB=AV197150 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662g2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075723 NCBI Caenorhabditis elegans F13C5.2 (F13C5.2) mRNA, complete cds. 11/11 None
F13C5.2 ENSEMBL cdna:known chromosome:CEL140:X:593960:596289:1 gene:F13C5.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:595872-596232(+) 100.0 100.0
Public Domain and Genome References
Gene Title bromodomain-containing protein
Ensembl F13C5.2
Entrez Gene 180410 Entrez gene
SwissProt O76561 EMBL-EBI
WormBase CE19384 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC64610 Hypothetical protein F13C5.2 [Caenorhabditis elegans] ref|NP_508124.1| F13C5.2 [Caenorhabditis elegans] 1.0E-77
blast CAE63646 Hypothetical protein CBG08144 [Caenorhabditis briggsae] 3.0E-45
blast CAE68907 Hypothetical protein CBG14881 [Caenorhabditis briggsae] 5.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR001487 EMBL-EBI Bromodomain 4.7E-34
Sequence
Target Sequence 
>C. ELEGANS:175092_S_AT
aatacccacccactcatttagagattattcctaaagtattccaatttgtcatgcagttcc
ttcagttgtaagaaacattatcccgatacttctttttgtattatgaatctcaatcgaccc
ttatgaatttatttgacaattaatgctttttcagcgtttccctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACCCACCCACTCATTTAGAGAT 604 171 89 Antisense
GAGATTATTCCTAAAGTATTCCAAT 226 397 109 Antisense
TCCAATTTGTCATGCAGTTCCTTCA 463 587 128 Antisense
TTGTCATGCAGTTCCTTCAGTTGTA 307 707 134 Antisense
GCAGTTCCTTCAGTTGTAAGAAACA 694 311 141 Antisense
GAAACATTATCCCGATACTTCTTTT 700 355 160 Antisense
TATCCCGATACTTCTTTTTGTATTA 485 657 167 Antisense
GTATTATGAATCTCAATCGACCCTT 8 451 186 Antisense
GAATCTCAATCGACCCTTATGAATT 633 327 193 Antisense
ATCGACCCTTATGAATTTATTTGAC 294 37 201 Antisense
TTAATGCTTTTTCAGCGTTTCCCTT 428 683 228 Antisense
Sequence Source Affymetrix Proprietary Database