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[175091_at]

Description AV192616 /REP_DB=TREMBL Accession /GB=AV192616 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk607e5 : 5prime end, single read.
Cluster 6grp_total > 89      4grp_total > 43      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 10.4
(-2.1)
A 		32.9
(3)
A 		6.2
(-3)
A 		16.8
(-0.6)
A 		27
B 6.1
(-2.5)
A 		42.4
(3)
P 		2.7
(-3)
A 		5.6
(-2.6)
A 		40
C 20
(-2)
A 		31.4
(3)
A 		24.1
(-0.2)
A 		17.7
(-3)
A 		14
avr 12.2
(-2.7) 		35.6
(3) 		11
(-3) 		13.4
(-2.4) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 34.9
(3)
A 		12
(-1.4)
A 		4
(-3)
A 		4.8
(-2.8)
A 		33.3
(2.7)
A 		18.6
(-0.2)
A 		31
B 16.5
(-1.8)
A 		16.9
(-1.8)
A 		5.6
(-3)
A 		7.1
(-2.8)
A 		38.7
(0.5)
P 		62.2
(3)
P 		57
C 14.5
(-1.6)
A 		27.5
(-0.2)
A 		2
(-3)
A 		20.8
(-0.9)
A 		48.1
(2.2)
P 		55.7
(3)
P 		54
avr 22
(-0.4) 		18.8
(-0.9) 		3.9
(-3) 		10.9
(-2) 		40
(2.2) 		45.5
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.8
(-0.6)
A 		7.1
(3)
A 		1.6
(-3)
A 		2.5
(-2)
A 		6
B 1.9
(-2.2)
A 		10.5
(3)
P 		0.6
(-3)
A 		1.2
(-2.6)
A 		10
C 6.6
(0.6)
A 		9
(3)
A 		8.4
(2.4)
A 		3
(-3)
A 		6
avr 4.1
(-1.3) 		8.9
(3) 		3.5
(-1.8) 		2.2
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 6.4
(0.6)
A 		4.3
(-0.8)
A 		0.9
(-3)
A 		1.2
(-2.8)
A 		10
(3)
A 		4.5
(-0.6)
A 		9
B 5.7
(-1.8)
A 		5.6
(-1.8)
A 		1.4
(-3)
A 		1.9
(-2.9)
A 		15.7
(0.9)
P 		23.2
(3)
P 		22
C 5.4
(-1.4)
A 		8.4
(-0.4)
A 		0.5
(-3)
A 		4.2
(-1.8)
A 		15.6
(2)
P 		18.6
(3)
P 		18
avr 5.8
(-1) 		6.1
(-0.8) 		0.9
(-3) 		2.4
(-2.4) 		13.8
(2.3) 		15.4
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175091_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20098
Sequence Type Exemplar sequence
Representative Public ID AV192616 NCBI
Target Description AV192616 /REP_DB=TREMBL Accession /GB=AV192616 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk607e5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058513 NCBI Caenorhabditis elegans Y71G12A.4 (Y71G12A.4) mRNA, complete cds. 11/11 A 
SNAP00000037831 ENSEMBL cdna:SNAP chromosome:CEL140:I:1880344:1887174:-1 9/11 None
Y71G12A.4 ENSEMBL cdna:known chromosome:CEL140:I:1885206:1894864:-1 gene:Y71G12A.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1885247-1890878(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71G12A.4
Entrez Gene 171759 Entrez gene
SwissProt Q9BL52 EMBL-EBI
WormBase CE30323 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31567 Hypothetical protein Y71G12A.4 [Caenorhabditis elegans] ref|NP_490914.2| Y71G12A.4 [Caenorhabditis elegans] 0.0
blast CAE74474 Hypothetical protein CBG22222 [Caenorhabditis briggsae] 0.0
blast AAK31567 Hypothetical protein Y71G12A.4 [Caenorhabditis elegans] ref|NP_490914.2| Y71G12A.4 [Caenorhabditis elegans] 7.0E-38
blast CAE46664 Hypothetical protein F01D5.7b [Caenorhabditis elegans] ref|NP_001022067.1| F01D5.7b [Caenorhabditis elegans] 1.0E-27
blast CAE74474 Hypothetical protein CBG22222 [Caenorhabditis briggsae] 1.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490914.2 1 86-105
Y71G12A.4 1 86-105
Sequence
Target Sequence 
>C. ELEGANS:175091_AT
acgccagccatcagggaatcttttgcgaacgagagatgtgggatcgtgtggaggcgttct
tgggctcccgtgtcggcatcacccggaactggatcgagcatttgcagtcggagacttcga
tttcggtggttcctgacttttgttcatcgtcacaagtgatttccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCCAGCCATCAGGGAATCTTTTG 390 91 96 Antisense
GCCATCAGGGAATCTTTTGCGAACG 266 279 102 Antisense
TTTTGCGAACGAGAGATGTGGGATC 38 669 116 Antisense
GATGTGGGATCGTGTGGAGGCGTTC 444 407 130 Antisense
TCGTGTGGAGGCGTTCTTGGGCTCC 157 605 139 Antisense
TCACCCGGAACTGGATCGAGCATTT 151 627 174 Antisense
GGATCGAGCATTTGCAGTCGGAGAC 135 513 186 Antisense
GCAGTCGGAGACTTCGATTTCGGTG 325 311 199 Antisense
GATTTCGGTGGTTCCTGACTTTTGT 92 429 214 Antisense
GTTCCTGACTTTTGTTCATCGTCAC 423 441 224 Antisense
GTTCATCGTCACAAGTGATTTCCAT 327 445 237 Antisense
Sequence Source Affymetrix Proprietary Database