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[175090_at]

Description AV202580 /REP_DB=TREMBL Accession /GB=AV202580 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk552c2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 26      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 60      6grp_total > 26      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 768
1 2 3 4 range
A 1029.1
(2.6)
P 		512.7
(-1.5)
P 		1080.5
(3)
P 		321.9
(-3)
P 		759
B 690.4
(0.2)
P 		905.4
(3)
P 		673.4
(-0)
P 		448.4
(-3)
P 		457
C 891.5
(2.7)
P 		873.8
(2.5)
P 		921.3
(3)
P 		312.5
(-3)
P 		609
avr 870.3
(2.8) 		764
(1.6) 		891.7
(3) 		360.9
(-3) 		531

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 375
1 2 3 4 5 6 range
A 452.4
(2.8)
P 		456.6
(3)
P 		328.2
(-2.7)
P 		323.1
(-3)
P 		322.4
(-3)
P 		340.7
(-2.2)
P 		134
B 622.9
(3)
P 		535.3
(1.5)
P 		288.4
(-2.9)
P 		283.3
(-3)
P 		390.9
(-1.1)
P 		372.7
(-1.4)
P 		340
C 604.8
(3)
P 		517.2
(1.5)
P 		420.2
(-0.1)
P 		248.3
(-3)
P 		318.8
(-1.8)
P 		339.1
(-1.5)
P 		357
avr 560
(3) 		503
(1.8) 		345.6
(-1.7) 		284.9
(-3) 		344
(-1.7) 		350.8
(-1.6) 		275
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 374.7
(3)
P 		111.3
(-1.8)
P 		282.5
(1.3)
P 		47.1
(-3)
P 		328
B 220.2
(2.8)
P 		223.6
(3)
P 		156
(-0.2)
P 		95.6
(-3)
P 		128
C 295.1
(2.4)
P 		251.2
(1.4)
P 		321.1
(3)
P 		52.7
(-3)
P 		268
avr 296.7
(3) 		195.4
(0.4) 		253.2
(1.9) 		65.1
(-3) 		232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 83.4
(-2.2)
P 		162.4
(3)
P 		71.5
(-3)
P 		82
(-2.3)
P 		97.3
(-1.3)
P 		83
(-2.2)
P 		91
B 216.8
(3)
P 		178.2
(1.4)
P 		70
(-3)
P 		75
(-2.8)
P 		158.8
(0.6)
P 		139
(-0.2)
P 		147
C 224.2
(3)
P 		157.8
(0.7)
P 		106.9
(-1)
P 		49.9
(-3)
P 		103.2
(-1.2)
P 		113.5
(-0.8)
P 		174
avr 174.8
(3) 		166.1
(2.5) 		82.8
(-2.2) 		69
(-3) 		119.8
(-0.1) 		111.8
(-0.6) 		106
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20569
Sequence Type Exemplar sequence
Representative Public ID AV202580 NCBI
Target Description AV202580 /REP_DB=TREMBL Accession /GB=AV202580 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk552c2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063511(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063511 NCBI Caenorhabditis elegans C18E9.6 (C18E9.6) mRNA, complete cds. 11/11 None
C18E9.6 ENSEMBL cdna:known chromosome:CEL140:II:8971896:8973475:-1 gene:C18E9.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8971939-8972231(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18E9.6
Entrez Gene 174431 Entrez gene
SwissProt Q18090 EMBL-EBI
WormBase CE05298 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262459_AT porin family protein at
CANINE_2:CFA.17187.1.S1_AT similar to Probable mitochondrial import receptor subunit TOM40 homolog (Translocase of outer membrane 40 kDa subunit homolog) (Haymaker protein) (p38.5) cfa
CANINE_2:CFAAFFX.7881.1.S1_AT similar to Probable mitochondrial import receptor subunit TOM40 homolog (Translocase of outer membrane 40 kDa subunit homolog) (Haymaker protein) (p38.5) cfa
CANINE_2:CFAAFFX.7881.1.S1_S_AT similar to Probable mitochondrial import receptor subunit TOM40 homolog (Translocase of outer membrane 40 kDa subunit homolog) (Haymaker protein) (p38.5) cfa
DROSOPHILA_2:1624205_AT Translocase of outer membrane 40 dm
DROSGENOME1:144654_AT Translocase of outer membrane 40 dm
HG-U133A:202264_S_AT translocase of outer mitochondrial membrane 40 homolog (yeast) hs
HG-U133_PLUS_2:202264_S_AT translocase of outer mitochondrial membrane 40 homolog (yeast) hs
HG-FOCUS:202264_S_AT translocase of outer mitochondrial membrane 40 homolog (yeast) hs
HG-U133A_2:202264_S_AT translocase of outer mitochondrial membrane 40 homolog (yeast) hs
U133_X3P:G5174722_3P_S_AT translocase of outer mitochondrial membrane 40 homolog (yeast) hs
HG-U95AV2:35620_AT translocase of outer mitochondrial membrane 40 homolog (yeast) hs
HG-U95D:70409_AT Translocase of outer mitochondrial membrane 40 homolog (yeast) hs
MOE430A:1426118_A_AT translocase of outer mitochondrial membrane 40 homolog (yeast) mm
MOUSE430A_2:1426118_A_AT translocase of outer mitochondrial membrane 40 homolog (yeast) mm
MOUSE430_2:1426118_A_AT translocase of outer mitochondrial membrane 40 homolog (yeast) mm
MG-U74AV2:160653_AT translocase of outer mitochondrial membrane 40 homolog (yeast) mm
MG-U74CV2:168324_R_AT translocase of outer mitochondrial membrane 40 homolog (yeast) mm
MG-U74CV2:134235_AT Translocase of outer mitochondrial membrane 40 homolog (yeast), mRNA (cDNA clone MGC:48245 IMAGE:3326417) mm
MU19KSUBA:TC23343_AT Translocase of outer mitochondrial membrane 40 homolog (yeast), mRNA (cDNA clone MGC:48245 IMAGE:3326417) mm
MU19KSUBA:TC23343_G_AT Translocase of outer mitochondrial membrane 40 homolog (yeast), mRNA (cDNA clone MGC:48245 IMAGE:3326417) mm
RG-U34B:RC_AA944181_AT translocase of outer mitochondrial membrane 40 rn
RAE230A:1389969_AT translocase of outer mitochondrial membrane 40 rn
RAT230_2:1389969_AT translocase of outer mitochondrial membrane 40 rn
YEAST_2:1775852_AT Component of the TOM (translocase of outer membrane) complex responsible for recognition and initial import steps for all mitochondrially directed proteins; constitutes the core element of the protein conducting pore Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6820 anion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5741 mitochondrial outer membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8308 voltage-gated ion-selective channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93850 Hypothetical protein C18E9.6 [Caenorhabditis elegans] ref|NP_495912.1| C18E9.6 [Caenorhabditis elegans] sp|Q18090|TOM40_CAEEL Probable mitochondrial import receptor subunit TOM40 homolog (Translocase of outer membrane 40 kDa subunit homolog) 1.0E-170
blast CAE59773 Hypothetical protein CBG03225 [Caenorhabditis briggsae] 1.0E-168
blast EAA12891 ENSANGP00000009965 [Anopheles gambiae str. PEST] ref|XP_317621.2| ENSANGP00000009965 [Anopheles gambiae str. PEST] 2.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR001925 EMBL-EBI Porin, eukaryotic type 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175090_AT
tcctcgccgtctcataagttgttattcgtctttttcccctttattttttagttttaggat
tagcacatatgcctattatttataggttgaattccatcaatcaatccaacagtcttccat
taattcgttgacattctttgtttttttcttatcgtctttttagagcggttttagtagtaa
tatgaatttattatcgtttccccttcctctagagtttcctttgttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCGCCGTCTCATAAGTTGTTAT 630 593 45 Antisense
TCATAAGTTGTTATTCGTCTTTTTC 369 619 56 Antisense
GGATTAGCACATATGCCTATTATTT 575 509 101 Antisense
GGTTGAATTCCATCAATCAATCCAA 243 507 129 Antisense
CATCAATCAATCCAACAGTCTTCCA 535 213 139 Antisense
ATCCAACAGTCTTCCATTAATTCGT 237 41 148 Antisense
TAATTCGTTGACATTCTTTGTTTTT 343 635 165 Antisense
TTTTTCTTATCGTCTTTTTAGAGCG 347 673 187 Antisense
TATCGTCTTTTTAGAGCGGTTTTAG 402 659 194 Antisense
TATGAATTTATTATCGTTTCCCCTT 193 657 225 Antisense
CTTCCTCTAGAGTTTCCTTTGTTGG 680 219 247 Antisense
Sequence Source Affymetrix Proprietary Database