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[175087_at]

Description CEK117GYR_rc /REP_DB=TREMBL Accession /GB=D73366 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk117g11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 37      4grp_high_8_8 > 0      6grp_highest_nonorm > 91      6grp_total > 76      4grp_total > 07      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 164.1
(-0.5)
P 		94.4
(-3)
P 		163.1
(-0.5)
P 		262.4
(3)
P 		168
B 201.9
(1.5)
P 		110.2
(-3)
P 		150.6
(-1)
P 		231.5
(3)
P 		121
C 199.1
(3)
P 		124.1
(-3)
P 		175.9
(1.1)
P 		125.5
(-2.9)
P 		75
avr 188.4
(1.9) 		109.6
(-3) 		163.2
(0.3) 		206.5
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 106.4
(-3)
P 		154.4
(-0.3)
P 		185.4
(1.5)
P 		152.5
(-0.4)
P 		212
(3)
P 		178.1
(1.1)
P 		106
B 89.1
(-3)
P 		225.7
(-0)
P 		124.4
(-2.2)
P 		235.7
(0.2)
P 		165.1
(-1.3)
P 		363.9
(3)
P 		275
C 262.5
(0.9)
P 		177.5
(-1.5)
P 		124.9
(-3)
P 		204.3
(-0.7)
P 		159.2
(-2)
P 		336.1
(3)
P 		211
avr 152.7
(-2.7) 		185.9
(-1.3) 		144.9
(-3) 		197.5
(-0.9) 		178.8
(-1.6) 		292.7
(3) 		148
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 59.7
(3)
P 		20.5
(-3)
P 		42.6
(0.4)
P 		38.4
(-0.3)
P 		39
B 64.4
(3)
P 		27.2
(-3)
P 		34.9
(-1.8)
P 		49.3
(0.6)
P 		37
C 65.9
(3)
P 		35.7
(-1.1)
P 		61.3
(2.4)
P 		21.2
(-3)
P 		45
avr 63.3
(3) 		27.8
(-3) 		46.3
(0.1) 		36.3
(-1.6) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 19.6
(-3)
P 		54.9
(1.8)
P 		40.4
(-0.2)
P 		38.7
(-0.4)
P 		64
(3)
P 		43.4
(0.2)
P 		44
B 31
(-3)
P 		75.1
(-0.4)
P 		30.2
(-3)
P 		62.4
(-1.2)
P 		67.1
(-0.9)
P 		135.7
(3)
P 		106
C 97.3
(1.9)
P 		54.2
(-1.3)
P 		31.8
(-3)
P 		41.1
(-2.3)
P 		51.5
(-1.5)
P 		112.5
(3)
P 		81
avr 49.3
(-1.6) 		61.4
(-0.4) 		34.1
(-3) 		47.4
(-1.7) 		60.9
(-0.5) 		97.2
(3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175087_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21490
Sequence Type Exemplar sequence
Representative Public ID CEK117GYR NCBI
Target Description CEK117GYR_rc /REP_DB=TREMBL Accession /GB=D73366 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk117g11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069035 NCBI Caenorhabditis elegans T26A8.1 (T26A8.1) mRNA, complete cds. 11/11 None
T26A8.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:8433020:8437961:1 gene:T26A8.1 11/11 A 
T26A8.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:8433102:8437961:1 gene:T26A8.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
T26A8.1.3 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8437627-8437910(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26A8.1
Entrez Gene 177644 Entrez gene
SwissProt Q22806 EMBL-EBI
WormBase CE07547 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501436 T26A8.1 [Caenorhabditis elegans] gb|AAA85757.1| Hypothetical protein T26A8.1 [Caenorhabditis elegans] 0.0
blast CAE71534 Hypothetical protein CBG18472 [Caenorhabditis briggsae] 1.0E-121
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501436.1 12 86-108,112-129,142-164,169-187,194-216,429-451,464-486,501-523,530-547,551-573,585-604,614-631
T26A8.1.1 12 86-108,112-129,142-164,169-187,194-216,429-451,464-486,501-523,530-547,551-573,585-604,614-631
T26A8.1.2 12 86-108,112-129,142-164,169-187,194-216,429-451,464-486,501-523,530-547,551-573,585-604,614-631
Sequence
Target Sequence 
>C. ELEGANS:175087_AT
attcgtttttttatctctcgctagtatctagattttctcaattcttgttcaaaccttcaa
aatttcttctccgctcggtgcctttctcatttcacgattttctggtactttccccgttca
caaatcgattagattttcacagaattctatttaaaatctttctgatattattttttcggt
gatctcatttcgtcattgtgataatgatgtttctgtgaaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCGTTTTTTTATCTCTCGCTAGT 204 9 25 Antisense
TTTTTTATCTCTCGCTAGTATCTAG 425 675 31 Antisense
TAGTATCTAGATTTTCTCAATTCTT 472 653 46 Antisense
CCTTTCTCATTTCACGATTTTCTGG 412 267 105 Antisense
CATTTCACGATTTTCTGGTACTTTC 439 215 112 Antisense
TTTCCCCGTTCACAAATCGATTAGA 389 663 133 Antisense
AATCGATTAGATTTTCACAGAATTC 53 169 147 Antisense
GAATTCTATTTAAAATCTTTCTGAT 240 325 166 Antisense
ATTATTTTTTCGGTGATCTCATTTC 1 15 191 Antisense
GGTGATCTCATTTCGTCATTGTGAT 83 501 202 Antisense
GTGATAATGATGTTTCTGTGAAAAG 72 485 222 Antisense
Sequence Source Affymetrix Proprietary Database