[Home] | [Total List]

[175086_at]

Description CEK106GXR_rc /REP_DB=TREMBL Accession /GB=D72676 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk106g10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 58      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 37      6grp_total > 59      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9626
1 2 3 4 range
A 5914.6
(-1.1)
P 		3901.9
(-3)
P 		4601.2
(-2.3)
P 		10265.9
(3)
P 		6364
B 6831.5
(-1)
P 		5003.3
(-2.2)
P 		3692.9
(-3)
P 		13318.7
(3)
P 		9626
C 5931.2
(-2.1)
P 		5109.1
(-2.8)
P 		4822.8
(-3)
P 		12541.1
(3)
P 		7718
avr 6225.8
(-1.5) 		4671.4
(-2.8) 		4372.3
(-3) 		12041.9
(3) 		7670

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3038
1 2 3 4 5 6 range
A 5174.3
(-0.2)
P 		4322.9
(-1.9)
P 		3884.1
(-2.8)
P 		3766.5
(-3)
P 		5040.9
(-0.5)
P 		6804.7
(3)
P 		3038
B 5701.5
(1.9)
P 		4493.6
(-2)
P 		4568.3
(-1.7)
P 		4172.3
(-3)
P 		4518
(-1.9)
P 		6035.2
(3)
P 		1863
C 5378.8
(1.3)
P 		4326.7
(-2.2)
P 		4462.2
(-1.7)
P 		4088.6
(-3)
P 		4890
(-0.3)
P 		5870.1
(3)
P 		1782
avr 5418.2
(0.8) 		4381.1
(-2) 		4304.9
(-2.2) 		4009.1
(-3) 		4816.3
(-0.8) 		6236.7
(3) 		2228
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1991
1 2 3 4 range
A 2153.5
(3)
P 		847
(-3)
P 		1202.8
(-1.4)
P 		1502.7
(0)
P 		1307
B 2178.5
(1)
P 		1235.7
(-1.8)
P 		855.7
(-3)
P 		2838.2
(3)
P 		1983
C 1963.4
(1.6)
P 		1468.9
(-3)
P 		1680.9
(-1)
P 		2114.6
(3)
P 		646
avr 2098.5
(2.7) 		1183.9
(-3) 		1246.5
(-2.6) 		2151.8
(3) 		968

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1428
1 2 3 4 5 6 range
A 953.8
(-2.2)
P 		1537.5
(2.1)
P 		845.9
(-3)
P 		955.3
(-2.2)
P 		1521.1
(2)
P 		1656.7
(3)
P 		811
B 1983.8
(1.6)
P 		1495.7
(-1)
P 		1109.3
(-3)
P 		1105.1
(-3)
P 		1835.6
(0.8)
P 		2250.5
(3)
P 		1145
C 1993.7
(3)
P 		1320.2
(-0.4)
P 		1135.7
(-1.4)
P 		822.2
(-3)
P 		1582.3
(0.9)
P 		1965.1
(2.9)
P 		1172
avr 1643.8
(1.1) 		1451.1
(-0) 		1030.3
(-2.6) 		960.9
(-3) 		1646.3
(1.1) 		1957.4
(3) 		997
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175086_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20188
Sequence Type Exemplar sequence
Representative Public ID CEK106GXR NCBI
Target Description CEK106GXR_rc /REP_DB=TREMBL Accession /GB=D72676 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk106g10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059075(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059075 NCBI Caenorhabditis elegans F21F3.6 (F21F3.6) mRNA, complete cds. 11/11 None
F21F3.6.2 ENSEMBL cdna:known chromosome:CEL140:I:4911826:4914050:-1 gene:F21F3.6 11/11 None
F21F3.6.1 ENSEMBL cdna:known chromosome:CEL140:I:4911826:4914048:-1 gene:F21F3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4911837-4912117(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21F3.6
Entrez Gene 172109 Entrez gene
SwissProt P91269 EMBL-EBI
WormBase CE09536 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42283 Hypothetical protein F21F3.6 [Caenorhabditis elegans] ref|NP_491476.1| F21F3.6 [Caenorhabditis elegans] 1.0E-104
blast CAE73112 Hypothetical protein CBG20493 [Caenorhabditis briggsae] 7.0E-99
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491476.1 4 55-73,93-115,122-144,164-181
F21F3.6.2 4 55-73,93-115,122-144,164-181
F21F3.6.1 4 55-73,93-115,122-144,164-181
Sequence
Target Sequence 
>C. ELEGANS:175086_AT
ctcacttctcagtcatcttgtatcccccatcgacacacattttgtactacccaccatgat
gttgccccgttctctccatcccacacacacacacttgtccaaacccaatgtatatttctc
ggaatatccccgatctaatttaattcccctatagattcctgtatcgggtgatttgtatca
ttcgaagaagttctcctttgtctctctctcaaaaaaccaatacaaacatcagcaaagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCACTTCTCAGTCATCTTGTATCC 619 227 14 Antisense
CCCCCATCGACACACATTTTGTACT 344 261 37 Antisense
TTTGTACTACCCACCATGATGTTGC 111 667 54 Antisense
CACACACTTGTCCAAACCCAATGTA 408 195 101 Antisense
GTCCAAACCCAATGTATATTTCTCG 640 471 110 Antisense
ATATTTCTCGGAATATCCCCGATCT 604 19 125 Antisense
CCGATCTAATTTAATTCCCCTATAG 74 239 143 Antisense
TCCCCTATAGATTCCTGTATCGGGT 683 595 158 Antisense
GTATCGGGTGATTTGTATCATTCGA 243 455 174 Antisense
TCGAAGAAGTTCTCCTTTGTCTCTC 463 601 195 Antisense
AACCAATACAAACATCAGCAAAGAT 247 147 228 Antisense
Sequence Source Affymetrix Proprietary Database