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[175085_at]

Description CEK126DZR_rc /REP_DB=TREMBL Accession /GB=D64845 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk126d12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 10      6grp_total > 05      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1295
1 2 3 4 range
A 2096.4
(3)
P 		1095.3
(-2.6)
P 		1313.1
(-1.4)
P 		1019.1
(-3)
P 		1077
B 1992.1
(3)
P 		1336.5
(-0.3)
P 		1101.3
(-1.5)
P 		801
(-3)
P 		1191
C 1946.2
(3)
P 		1319.7
(-0.7)
P 		1239.1
(-1.2)
P 		933.8
(-3)
P 		1012
avr 2011.6
(3) 		1250.5
(-1.2) 		1217.8
(-1.4) 		918
(-3) 		1094

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1352
1 2 3 4 5 6 range
A 2135.9
(3)
P 		1568.4
(0.1)
P 		1055.8
(-2.6)
P 		1039.3
(-2.6)
P 		1538.8
(-0.1)
P 		970.6
(-3)
P 		1165
B 2041.7
(3)
P 		1903.2
(2.3)
P 		784.1
(-3)
P 		1628
(1)
P 		1248.9
(-0.8)
P 		1283.8
(-0.6)
P 		1258
C 1753.9
(1.8)
P 		1940.8
(3)
P 		1144
(-2.2)
P 		1098.3
(-2.5)
P 		1026.2
(-3)
P 		1140.9
(-2.2)
P 		915
avr 1977.2
(3) 		1804.1
(1.9) 		994.6
(-3) 		1255.2
(-1.4) 		1271.3
(-1.3) 		1131.8
(-2.2) 		983
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 614
1 2 3 4 range
A 763.3
(3)
P 		237.8
(-2.1)
P 		343.3
(-1.1)
P 		149.2
(-3)
P 		614
B 635.3
(3)
P 		330.1
(-0.9)
P 		255.2
(-1.9)
P 		170.7
(-3)
P 		465
C 644.2
(3)
P 		379.4
(-0.3)
P 		431.9
(0.4)
P 		157.5
(-3)
P 		487
avr 680.9
(3) 		315.8
(-1.2) 		343.5
(-0.9) 		159.1
(-3) 		522

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 520
1 2 3 4 5 6 range
A 393.7
(-0)
P 		557.8
(3)
P 		229.9
(-3)
P 		263.6
(-2.4)
P 		464.4
(1.3)
P 		236.3
(-2.9)
P 		328
B 710.4
(3)
P 		633.5
(2.1)
P 		190.4
(-3)
P 		431.2
(-0.2)
P 		507.4
(0.7)
P 		478.7
(0.3)
P 		520
C 650.1
(3)
P 		592.2
(2.2)
P 		291.2
(-2)
P 		220.9
(-3)
P 		332.1
(-1.4)
P 		381.9
(-0.7)
P 		429
avr 584.7
(2.8) 		594.5
(3) 		237.2
(-3) 		305.2
(-1.9) 		434.6
(0.3) 		365.6
(-0.8) 		357
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175085_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20558
Sequence Type Exemplar sequence
Representative Public ID CEK126DZR NCBI
Target Description CEK126DZR_rc /REP_DB=TREMBL Accession /GB=D64845 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk126d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026884(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026884 NCBI Caenorhabditis elegans D2085.5b (D2085.5) mRNA, complete cds. 11/11 None
D2085.5b.1 ENSEMBL cdna:known chromosome:CEL140:II:8669066:8677167:-1 gene:D2085.5 11/11 A 
D2085.5b.2 ENSEMBL cdna:known chromosome:CEL140:II:8669066:8674932:-1 gene:D2085.5 11/11 A 
D2085.5b.3 ENSEMBL cdna:known chromosome:CEL140:II:8669066:8676793:-1 gene:D2085.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3564922 2 1 NM_001026884 175085_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8669073-8669443(-) 100.0 100.0
Public Domain and Genome References
Ensembl D2085.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91265 Hypothetical protein D2085.5a [Caenorhabditis elegans] emb|CAA91065.2| Hypothetical protein D2085.5a [Caenorhabditis elegans] ref|NP_001022054.1| D2085.5a [Caenorhabditis elegans] 0.0
blast CAE17686 Hypothetical protein D2085.5b [Caenorhabditis elegans] emb|CAE17775.1| Hypothetical protein D2085.5b [Caenorhabditis elegans] ref|NP_001022055.1| D2085.5b [Caenorhabditis elegans] 0.0
blast CAE65949 Hypothetical protein CBG11128 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175085_AT
aatgcaacgcaactgatccttatgttcctgtgatatcttttttttctcccaaaatgtaca
tatttcaacgggccagttagcttttttatatcattgttttcctcggagcaattggtactt
cattgcaaattgttttccatttccctactgcttgggtatttttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCAACGCAACTGATCCTTATGT 593 165 125 Antisense
GATCCTTATGTTCCTGTGATATCTT 132 417 139 Antisense
CTGTGATATCTTTTTTTTCTCCCAA 217 241 152 Antisense
TTTTTTTCTCCCAAAATGTACATAT 320 675 163 Antisense
ATGTACATATTTCAACGGGCCAGTT 516 13 178 Antisense
GGGCCAGTTAGCTTTTTTATATCAT 2 493 194 Antisense
TATATCATTGTTTTCCTCGGAGCAA 568 661 211 Antisense
TTCCTCGGAGCAATTGGTACTTCAT 56 701 223 Antisense
TGCAAATTGTTTTCCATTTCCCTAC 460 577 248 Antisense
TTCCATTTCCCTACTGCTTGGGTAT 105 693 259 Antisense
TTCCCTACTGCTTGGGTATTTTTAT 421 695 265 Antisense
Sequence Source Affymetrix Proprietary Database