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[175083_s_at]

Description C52132_rc /REP_DB=TREMBL Accession /GB=C52132 /CHR=5 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk238f1 : 3prime end, single read.
Cluster 6grp_total > 27      4grp_total > 30      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 73.1
(1.7)
A 		63.9
(1)
A 		3.9
(-3)
A 		92.9
(3)
A 		89
B 95.6
(3)
A 		11.8
(-2.7)
A 		7.3
(-3)
A 		60.9
(0.6)
A 		88
C 60.2
(3)
A 		10.6
(-3)
A 		34.2
(-0.1)
A 		18.8
(-2)
A 		50
avr 76.3
(3) 		28.8
(-1.7) 		15.1
(-3) 		57.5
(1.2) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 10.3
(-2.7)
A 		47.2
(-0.2)
A 		18.6
(-2.1)
A 		69.9
(1.4)
A 		5.8
(-3)
A 		94.2
(3)
A 		88
B 28.1
(-1.4)
A 		67.2
(3)
A 		13.7
(-3)
A 		15.4
(-2.8)
A 		46.8
(0.7)
A 		38.3
(-0.2)
A 		54
C 142.1
(3)
A 		67.4
(-0.3)
A 		46.3
(-1.3)
A 		10.3
(-2.9)
A 		59.4
(-0.7)
A 		7.3
(-3)
A 		135
avr 60.2
(2.9) 		60.6
(3) 		26.2
(-3) 		31.9
(-2) 		37.3
(-1.1) 		46.6
(0.6) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 26.6
(3)
A 		13.9
(0)
A 		1
(-3)
A 		13.6
(-0)
A 		26
B 30.5
(3)
A 		2.9
(-2.8)
A 		1.7
(-3)
A 		13
(-0.6)
A 		29
C 19.9
(3)
A 		3
(-3)
A 		11.9
(0.2)
A 		3.2
(-2.9)
A 		17
avr 25.7
(3) 		6.6
(-2.5) 		4.9
(-3) 		9.9
(-1.6) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 1.9
(-2.9)
A 		16.8
(1.3)
A 		4.1
(-2.3)
A 		17.7
(1.5)
A 		1.7
(-3)
A 		22.9
(3)
A 		21
B 9.8
(-1)
A 		22.4
(3)
A 		3.3
(-3)
A 		4.1
(-2.7)
A 		19
(1.9)
A 		14.3
(0.5)
A 		19
C 52.7
(3)
A 		20.6
(-0.8)
A 		11.8
(-1.8)
A 		2.1
(-3)
A 		19.2
(-1)
A 		2.5
(-3)
A 		51
avr 21.5
(3) 		19.9
(2.4) 		6.4
(-3) 		8
(-2.4) 		13.3
(-0.3) 		13.2
(-0.3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175083_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28236
Sequence Type Exemplar sequence
Representative Public ID C52132 NCBI
Target Description C52132_rc /REP_DB=TREMBL Accession /GB=C52132 /CHR=5 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk238f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028685(11), NM_072126(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028685 NCBI Caenorhabditis elegans F26F12.3c (F26F12.3) mRNA, complete cds. 11/11 None
NM_072126 NCBI Caenorhabditis elegans F26F12.3a (F26F12.3) mRNA, complete cds. 11/11 A 
SNAP00000007008 ENSEMBL cdna:SNAP chromosome:CEL140:V:5842426:5847025:-1 11/11 None
GENEFINDER00000007014 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5842426:5848269:-1 11/11 None
F26F12.3c.2 ENSEMBL cdna:known chromosome:CEL140:V:5841564:5848313:-1 gene:F26F12.3 11/11 None
F26F12.3a.2 ENSEMBL cdna:known chromosome:CEL140:V:5842426:5848315:-1 gene:F26F12.3 11/11 A 
F26F12.3b ENSEMBL cdna:known chromosome:CEL140:V:5842426:5847071:-1 gene:F26F12.3 11/11 A 
F26F12.3a.1 ENSEMBL cdna:known chromosome:CEL140:V:5842426:5848313:-1 gene:F26F12.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178972 3 2 NM_001028685 173086_s_at (11), 174514_at (11), 175083_s_at (11)
NM_072126 175083_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5846552-5846816(-) 100.0 100.0
Public Domain and Genome References
Ensembl F26F12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023856 F26F12.3c [Caenorhabditis elegans] gb|AAV58870.1| Hypothetical protein F26F12.3c [Caenorhabditis elegans] 0.0
blast NP_504528 F26F12.3b [Caenorhabditis elegans] gb|AAD34666.1| Hypothetical protein F26F12.3b [Caenorhabditis elegans] 0.0
blast NP_504527 F26F12.3a [Caenorhabditis elegans] gb|AAC25890.2| Hypothetical protein F26F12.3a [Caenorhabditis elegans] 0.0
blast CAE64558 Hypothetical protein CBG09307 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175083_S_AT
ttcccggaattgagtggcaaactgacgggcaggaaggagaagggcagacgtagcgcggtg
gccaaccgccatgcacgccaggccgccaagcgtggcgcattcctcgtcaagaccatcgac
gatccgaaccacgtgctcggaaagaagcgcaaggagcgcgtcgcttcggaaagccacgat
ggcatcgcctcgaacgtcctgtactcaatgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCGGAATTGAGTGGCAAACTGA 149 687 13 Antisense
GAGTGGCAAACTGACGGGCAGGAAG 493 401 24 Antisense
GGAGAAGGGCAGACGTAGCGCGGTG 393 517 48 Antisense
GCATTCCTCGTCAAGACCATCGACG 463 307 109 Antisense
GTCAAGACCATCGACGATCCGAACC 383 463 118 Antisense
ACGATCCGAACCACGTGCTCGGAAA 247 91 131 Antisense
CACGTGCTCGGAAAGAAGCGCAAGG 365 199 142 Antisense
GAAGCGCAAGGAGCGCGTCGCTTCG 651 343 156 Antisense
CGTCGCTTCGGAAAGCCACGATGGC 401 243 171 Antisense
CGGAAAGCCACGATGGCATCGCCTC 370 243 179 Antisense
CTCGAACGTCCTGTACTCAATGAAT 162 231 201 Antisense
Sequence Source Affymetrix Proprietary Database