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[175082_s_at]

Description C35102_rc /REP_DB=TREMBL Accession /GB=C35102 /CHR=2 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk423g5 : 3prime end, single read.
Cluster 6grp_total > 81      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 2.7
(-2.8)
A 		37.1
(3)
A 		1.8
(-3)
A 		17.7
(-0.3)
A 		35
B 8.3
(-2.2)
A 		43.6
(3)
A 		5.1
(-2.7)
A 		3
(-3)
A 		41
C 15.1
(-0.6)
A 		17.5
(-0.2)
A 		2
(-3)
A 		34.8
(3)
A 		33
avr 8.7
(-1.8) 		32.7
(3) 		3
(-3) 		18.5
(0.1) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 14.4
(-0.3)
A 		3.2
(-2.6)
A 		29.9
(3)
A 		2.7
(-2.7)
A 		10.3
(-1.1)
A 		1.5
(-3)
A 		28
B 10.5
(-0.6)
A 		19.3
(1.8)
A 		15.9
(0.9)
A 		23.7
(3)
A 		3.1
(-2.6)
A 		1.5
(-3)
A 		22
C 13
(-1.4)
A 		23.7
(0.3)
A 		2.2
(-3)
A 		41.8
(3)
A 		35.6
(2.1)
A 		5.3
(-2.5)
A 		40
avr 12.6
(-0) 		15.4
(0.8) 		16
(1) 		22.7
(3) 		16.3
(1.1) 		2.8
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1
(-2.6)
A 		8
(3)
A 		0.5
(-3)
A 		2.6
(-1.3)
A 		8
B 2.6
(-1.8)
A 		10.8
(3)
A 		1.2
(-2.6)
A 		0.6
(-3)
A 		10
C 5
(2)
A 		5
(2)
A 		0.7
(-3)
A 		5.9
(3)
A 		5
avr 2.9
(-1.2) 		7.9
(3) 		0.8
(-3) 		3
(-1.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.7
(-0.7)
A 		1.2
(-2.2)
A 		6.5
(3)
A 		0.7
(-2.7)
A 		3.1
(-0.3)
A 		0.4
(-3)
A 		6
B 3.7
(0.2)
A 		6.4
(3)
A 		3.9
(0.4)
A 		6.3
(2.9)
A 		1.3
(-2.3)
A 		0.6
(-3)
A 		6
C 4.8
(-0.7)
A 		7.2
(0.6)
A 		0.6
(-3)
A 		8.4
(1.3)
A 		11.5
(3)
A 		1.8
(-2.3)
A 		11
avr 3.7
(0.8) 		4.9
(2.5) 		3.7
(0.8) 		5.1
(2.7) 		5.3
(3) 		0.9
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175082_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28223
Sequence Type Exemplar sequence
Representative Public ID C35102 NCBI
Target Description C35102_rc /REP_DB=TREMBL Accession /GB=C35102 /CHR=2 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk423g5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C35102
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C35102 C35102_rc /REP_DB=TREMBL Accession /GB=C35102 /CHR=2 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk423g5 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061929 11/11 Negative Strand Matching Probes None
F22E5.17 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2678807-2679087(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175082_S_AT
ccgcctacgtctcgtgagaatcaccgcacgtgtcccgtcgttcttctcaatcttatacac
cgtccatcttctgtccacattcatgtccaacttcttttcagcggtaacctttctcagcgg
aagaccttccagtgcaacctctccatcaaactcttcaaggtccagacggatatgctccag
atttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCCTACGTCTCGTGAGAATCACC 109 261 52 Antisense
TCGTGAGAATCACCGCACGTGTCCC 402 603 63 Antisense
GTTCTTCTCAATCTTATACACCGTC 515 443 91 Antisense
TTCTGTCCACATTCATGTCCAACTT 650 693 120 Antisense
CATTCATGTCCAACTTCTTTTCAGC 27 217 129 Antisense
CTTTTCAGCGGTAACCTTTCTCAGC 137 223 145 Antisense
TAACCTTTCTCAGCGGAAGACCTTC 590 627 156 Antisense
AGCGGAAGACCTTCCAGTGCAACCT 175 69 167 Antisense
ATCAAACTCTTCAAGGTCCAGACGG 399 27 196 Antisense
AGGTCCAGACGGATATGCTCCAGAT 418 57 209 Antisense
CCAGACGGATATGCTCCAGATTTGA 106 269 213 Antisense
Sequence Source Affymetrix Proprietary Database