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[175081_s_at]

Description C56553_rc /REP_DB=TREMBL Accession /GB=C56553 /CHR=2 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk263f5 : 3prime end, single read.
Cluster 6grp_total > 91      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 7.5
(-2.6)
A 		5.2
(-3)
A 		21
(-0.6)
A 		44.1
(3)
A 		39
B 15.5
(0.8)
A 		10.3
(-1.1)
A 		5.1
(-3)
A 		21.4
(3)
A 		16
C 10.5
(-3)
A 		12.7
(1.3)
A 		13.6
(3)
A 		11
(-2)
A 		3
avr 11.2
(-2.3) 		9.4
(-3) 		13.2
(-1.6) 		25.5
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 16.5
(-0.6)
A 		6.8
(-2.8)
A 		7.7
(-2.6)
A 		6.1
(-3)
A 		31.7
(3)
A 		6.9
(-2.8)
A 		26
B 26.4
(2.5)
A 		7.2
(-2.6)
A 		5.7
(-2.9)
A 		6
(-2.9)
A 		28.5
(3)
A 		5.5
(-3)
A 		23
C 4.9
(-3)
A 		7.1
(-2.7)
A 		18
(-1.3)
A 		51.9
(3)
A 		5.4
(-2.9)
A 		13.3
(-1.9)
A 		47
avr 15.9
(0.6) 		7
(-3) 		10.5
(-1.6) 		21.3
(2.8) 		21.9
(3) 		8.6
(-2.4) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.7
(-1.2)
A 		1.1
(-3)
A 		5.5
(2)
A 		6.4
(3)
A 		5
B 4.9
(3)
A 		2.5
(-0.9)
A 		1.2
(-3)
A 		4.6
(2.5)
A 		4
C 3.5
(0.3)
A 		3.6
(0.5)
A 		4.8
(3)
A 		1.9
(-3)
A 		3
avr 3.7
(1.1) 		2.4
(-3) 		3.8
(1.4) 		4.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3
(-2)
A 		2.4
(-2.4)
A 		1.7
(-2.9)
A 		1.6
(-3)
A 		9.6
(3)
A 		1.7
(-2.9)
A 		8
B 9.2
(1.6)
A 		2.4
(-2.4)
A 		1.4
(-3)
A 		1.6
(-2.9)
A 		11.6
(3)
A 		2.1
(-2.6)
A 		10
C 1.8
(-2.9)
A 		2.2
(-2.7)
A 		4.6
(-1)
A 		10.4
(3)
A 		1.7
(-3)
A 		4.4
(-1.1)
A 		9
avr 4.7
(-0.3) 		2.3
(-3) 		2.6
(-2.7) 		4.5
(-0.5) 		7.6
(3) 		2.7
(-2.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175081_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28221
Sequence Type Exemplar sequence
Representative Public ID C56553 NCBI
Target Description C56553_rc /REP_DB=TREMBL Accession /GB=C56553 /CHR=2 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk263f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C56553
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C56553 C56553_rc /REP_DB=TREMBL Accession /GB=C56553 /CHR=2 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk263f5 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061955 11/11 Negative Strand Matching Probes A 
SNAP00000023714 11/11 Negative Strand Matching Probes None
F08D12.7 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2767336-2768339(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175081_S_AT
ttcttttttcgagcccgcaatgttatggtccccgatgcaggggaacttttttgcggtcgg
cttgtcgagcatcatcttccgtttgcagatgaaaaactcggtgctgtagagctcaaacca
gtcctttttgctctggaagatcaggcgttccaggtcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTTTTTCGAGCCCGCAATGTTA 312 673 74 Antisense
TTCGAGCCCGCAATGTTATGGTCCC 470 695 81 Antisense
CGCAATGTTATGGTCCCCGATGCAG 445 253 89 Antisense
TATGGTCCCCGATGCAGGGGAACTT 547 653 97 Antisense
TGCAGGGGAACTTTTTTGCGGTCGG 59 565 109 Antisense
GAGCATCATCTTCCGTTTGCAGATG 404 389 140 Antisense
TGCAGATGAAAAACTCGGTGCTGTA 241 577 157 Antisense
AACTCGGTGCTGTAGAGCTCAAACC 535 137 168 Antisense
GAGCTCAAACCAGTCCTTTTTGCTC 468 387 182 Antisense
CAGTCCTTTTTGCTCTGGAAGATCA 493 207 192 Antisense
GGAAGATCAGGCGTTCCAGGTCGTT 79 529 208 Antisense
Sequence Source Affymetrix Proprietary Database