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[175080_at] CTP:phosphocholine cytidylyltransferase

Description C33555_rc /REP_DB=TREMBL Accession /GB=C33555 /CHR=1 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk372b2 : 3prime end, single read.
Cluster 6grp_total > 96      4grp_total > 08      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 59.7
(-3)
A 		71.4
(-1.9)
A 		122.8
(3)
A 		120.2
(2.8)
P 		63
B 65
(-1.8)
A 		31.8
(-3)
A 		76.8
(-1.4)
A 		204
(3)
P 		172
C 92.1
(-3)
A 		101.2
(-2.5)
A 		99.6
(-2.6)
A 		199.8
(3)
P 		108
avr 72.3
(-2.8) 		68.1
(-3) 		99.7
(-1.2) 		174.7
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 122.6
(-0.5)
A 		44.2
(-3)
A 		50
(-2.8)
P 		141
(0.1)
P 		118.6
(-0.6)
P 		230.1
(3)
P 		186
B 65.7
(-1.8)
A 		83.6
(-0.8)
A 		43.9
(-3)
A 		89.2
(-0.5)
P 		151.5
(3)
P 		104.3
(0.4)
P 		108
C 61.2
(-1)
A 		51.2
(-1.5)
A 		22
(-3)
A 		114.2
(1.6)
P 		141.5
(3)
P 		126.7
(2.3)
P 		120
avr 83.2
(-0.7) 		59.7
(-1.9) 		38.6
(-3) 		114.8
(1) 		137.2
(2.1) 		153.7
(3) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 21.8
(-0.7)
A 		15.5
(-3)
A 		32.1
(3)
A 		17.6
(-2.2)
P 		17
B 20.7
(-0.8)
A 		7.8
(-3)
A 		17.8
(-1.3)
A 		43.5
(3)
P 		36
C 30.5
(-1.5)
A 		29.1
(-3)
A 		34.7
(3)
A 		33.7
(1.9)
P 		6
avr 24.3
(-0.1) 		17.5
(-3) 		28.2
(1.6) 		31.6
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 22.6
(-1.4)
A 		15.7
(-2.4)
A 		10.9
(-3)
P 		35.8
(0.3)
P 		35.8
(0.3)
P 		56
(3)
P 		45
B 22.9
(-1.6)
A 		27.8
(-1)
A 		10.7
(-3)
A 		23.6
(-1.5)
P 		61.5
(3)
P 		38.9
(0.3)
P 		51
C 22.7
(-0.4)
A 		15.6
(-1.5)
A 		5.6
(-3)
A 		23
(-0.4)
P 		45.8
(3)
P 		42.4
(2.5)
P 		40
avr 22.7
(-0.9) 		19.7
(-1.4) 		9.1
(-3) 		27.5
(-0.1) 		47.7
(3) 		45.8
(2.7) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175080_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28216
Sequence Type Exemplar sequence
Representative Public ID C33555 NCBI
Target Description C33555_rc /REP_DB=TREMBL Accession /GB=C33555 /CHR=1 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk372b2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182093(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182093 NCBI Caenorhabditis elegans Y18H1A.11 (Y18H1A.11) mRNA, complete cds. 9/11 None
SNAP00000022328 ENSEMBL cdna:SNAP chromosome:CEL140:I:678282:691259:1 9/11 None
GENEFINDER00000022382 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:680433:683430:1 9/11 None
Y18H1A.11 ENSEMBL cdna:known chromosome:CEL140:I:680433:683430:1 gene:Y18H1A.11 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y18H1A.10 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:682888-683167(+) 100.0 100.0
Public Domain and Genome References
Gene Title CTP:phosphocholine cytidylyltransferase
Ensembl Y18H1A.11
Entrez Gene 353380 Entrez gene
SwissProt Q8IU09 EMBL-EBI
WormBase CE32007 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16779 nucleotidyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_490769 Y18H1A.1 [Caenorhabditis elegans] gb|AAK21505.1| Hypothetical protein Y18H1A.1 [Caenorhabditis elegans] 0.0
blast CAB16508 Hypothetical protein Y57G11C.6 [Caenorhabditis elegans] ref|NP_502779.1| Y57G11C.6 [Caenorhabditis elegans] 0.0
blast AAB88314 Hypothetical protein C24D10.1 [Caenorhabditis elegans] ref|NP_500733.2| C24D10.1 [Caenorhabditis elegans] 0.0
blast NP_871893 Y18H1A.11 [Caenorhabditis elegans] gb|AAN39663.1| Hypothetical protein Y18H1A.11 [Caenorhabditis elegans] 1.0E-159
blast NP_871893 Y18H1A.11 [Caenorhabditis elegans] gb|AAN39663.1| Hypothetical protein Y18H1A.11 [Caenorhabditis elegans] 1.0E-154
blast CAE61314 Hypothetical protein CBG05149 [Caenorhabditis briggsae] 1.0E-123
blast CAE61314 Hypothetical protein CBG05149 [Caenorhabditis briggsae] 1.0E-118
blast CAE70390 Hypothetical protein CBG16955 [Caenorhabditis briggsae] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 1.3E-29
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 1.3E-29
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.5E-23
Sequence
Target Sequence 
>C. ELEGANS:175080_AT
aattctaggccacgaatttcctcttccaggttgactttatgtcacacgacgctctgccat
accaaggtcccgccggagaagacatctacgagaagcaccgcactgctggcatgttcctgg
agacgcagagaaccgaaggaatatcgacgagcgattcgatttgtcgaattatccgcgact
acgacacgtatgtcagaagaaatttgcagagaggatattcggccaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTAGGCCACGAATTTCCTCTT 688 175 30 Antisense
GAATTTCCTCTTCCAGGTTGACTTT 597 325 43 Antisense
TGACTTTATGTCACACGACGCTCTG 591 569 61 Antisense
TACCAAGGTCCCGCCGGAGAAGACA 535 199 89 Antisense
GTCCCGCCGGAGAAGACATCTACGA 144 475 96 Antisense
AGACATCTACGAGAAGCACCGCACT 650 71 109 Antisense
TGCTGGCATGTTCCTGGAGACGCAG 588 581 133 Antisense
GGAGACGCAGAGAACCGAAGGAATA 90 519 148 Antisense
ATCGACGAGCGATTCGATTTGTCGA 117 37 172 Antisense
AATTATCCGCGACTACGACACGTAT 348 175 196 Antisense
TGCAGAGAGGATATTCGGCCACCGA 154 579 234 Antisense
Sequence Source Affymetrix Proprietary Database