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[175078_s_at]

Description CEC5594_rc /REP_DB=TREMBL Accession /GB=C11559 /CHR=4 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk183c1 : 3prime end, single read.
Cluster 6grp_total > 99      4grp_total > 17      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 29.1
(-3)
A 		50.9
(-0.2)
A 		45.7
(-0.9)
A 		75.9
(3)
A 		47
B 33.3
(0.5)
A 		29
(-0.4)
A 		16.8
(-3)
A 		45.2
(3)
A 		28
C 26.4
(-3)
A 		61.2
(-0.3)
A 		55.4
(-0.8)
A 		104.9
(3)
A 		79
avr 29.6
(-3) 		47
(-0.7) 		39.3
(-1.7) 		75.3
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 38.3
(-3)
A 		45.3
(-2.4)
A 		52.9
(-1.7)
A 		73.5
(0.1)
P 		91.8
(1.7)
P 		106.9
(3)
P 		69
B 29.9
(-1.6)
A 		45.9
(-0.5)
A 		9.6
(-3)
A 		9
(-3)
A 		86.1
(2.2)
P 		97.8
(3)
P 		89
C 32.9
(-3)
A 		55.3
(0.2)
A 		45.8
(-1.2)
A 		53.3
(-0.1)
A 		72.2
(2.6)
A 		74.9
(3)
P 		42
avr 33.7
(-3) 		48.8
(-1.5) 		36.1
(-2.8) 		45.3
(-1.8) 		83.4
(2) 		93.2
(3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 10.6
(-3)
A 		11.1
(-0.9)
A 		12
(3)
A 		11.1
(-0.9)
A 		1
B 10.6
(3)
A 		7.2
(-0)
A 		3.9
(-3)
A 		9.6
(2.1)
A 		7
C 8.8
(-3)
A 		17.6
(2)
A 		19.3
(3)
A 		17.7
(2.1)
A 		11
avr 10
(-3) 		12
(1.3) 		11.7
(0.6) 		12.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 7.1
(-3)
A 		16.1
(-0.4)
A 		11.5
(-1.7)
A 		18.7
(0.4)
P 		27.7
(3)
P 		26
(2.5)
P 		21
B 10.4
(-1.6)
A 		15.3
(-0.7)
A 		2.3
(-3)
A 		2.4
(-3)
A 		35
(2.7)
P 		36.5
(3)
P 		34
C 12.2
(-2.4)
A 		16.9
(-0.4)
A 		11.7
(-2.6)
A 		10.7
(-3)
A 		23.4
(2.3)
A 		25.1
(3)
P 		14
avr 9.9
(-2.6) 		16.1
(-0.8) 		8.5
(-3) 		10.6
(-2.4) 		28.7
(2.9) 		29.2
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175078_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28226
Sequence Type Exemplar sequence
Representative Public ID CEC5594 NCBI
Target Description CEC5594_rc /REP_DB=TREMBL Accession /GB=C11559 /CHR=4 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk183c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069237(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069237 NCBI Caenorhabditis elegans F49C12.15 (F49C12.15) mRNA, complete cds. 11/11 A 
GENEFINDER00000032717 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9324448:9326596:1 11/11 None
F49C12.15 ENSEMBL cdna:known chromosome:CEL140:IV:9324419:9327484:1 gene:F49C12.15 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9324604-9324884(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49C12.15
Entrez Gene 177759 Entrez gene
SwissProt O01262 EMBL-EBI
WormBase CE03375 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92521 Hypothetical protein F49C12.15 [Caenorhabditis elegans] emb|CAA92493.1| Hypothetical protein F49C12.15 [Caenorhabditis elegans] ref|NP_501638.1| F49C12.15 [Caenorhabditis elegans] 0.0
blast CAE56845 Hypothetical protein CBG24672 [Caenorhabditis briggsae] 0.0
blast CAE56845 Hypothetical protein CBG24672 [Caenorhabditis briggsae] 1.0E-119
Sequence
Target Sequence 
>C. ELEGANS:175078_S_AT
gaaagtctttatgtctctgcaagtgatcagccaccagcagagattacaatcaaacttgag
aaggatacaaaaagaaagatcacaattatcagtgaagttgagaacccaaaacgtgctcga
cgtggatcagctgatcttcgacgtcaggctattgtgaatagtgctatccgaagtgctcag
tctactgcatcttctcgttccagaagtagaagccgaagcagaagccgatcgacaatgaac
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGTCTTTATGTCTCTGCAAGTG 688 359 21 Antisense
CTCTGCAAGTGATCAGCCACCAGCA 426 229 35 Antisense
GTTGAGAACCCAAAACGTGCTCGAC 278 435 117 Antisense
ACGTGCTCGACGTGGATCAGCTGAT 505 95 131 Antisense
GATCAGCTGATCTTCGACGTCAGGC 440 419 145 Antisense
GATCTTCGACGTCAGGCTATTGTGA 227 419 153 Antisense
ATAGTGCTATCCGAAGTGCTCAGTC 45 23 178 Antisense
GAAGTGCTCAGTCTACTGCATCTTC 669 335 190 Antisense
TACTGCATCTTCTCGTTCCAGAAGT 638 645 203 Antisense
GAAGCCGAAGCAGAAGCCGATCGAC 110 345 229 Antisense
GCAGAAGCCGATCGACAATGAACCA 192 313 238 Antisense
Sequence Source Affymetrix Proprietary Database