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[175077_s_at]

Description CEK008F3R_rc /REP_DB=TREMBL Accession /GB=D27079 /CHR=2 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk8f3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_high_8_8 > 60      6grp_highest_nonorm > 34      6grp_total > 52      4grp_total > 60      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3097
1 2 3 4 range
A 2331.5
(1.5)
P 		2439
(1.7)
P 		3087.8
(3)
P 		12.2
(-3)
A 		3076
B 2245.5
(1.6)
P 		2820.9
(2.8)
P 		2917.3
(3)
P 		44.2
(-3)
P 		2873
C 2293.4
(1.4)
P 		2627.5
(2.1)
P 		3109.6
(3)
P 		41.1
(-3)
A 		3069
avr 2290.1
(1.5) 		2629.1
(2.2) 		3038.2
(3) 		32.5
(-3) 		3006

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2234
1 2 3 4 5 6 range
A 1943.6
(-1.3)
P 		2691.8
(0.7)
P 		3557.1
(3)
P 		2373.1
(-0.2)
P 		1553.1
(-2.4)
P 		1322.9
(-3)
P 		2234
B 1808.1
(-1.7)
P 		2594.8
(0.9)
P 		3241.1
(3)
P 		2165.8
(-0.5)
P 		1476
(-2.8)
P 		1401.3
(-3)
P 		1840
C 1736.1
(-2.6)
P 		2495.3
(-0.2)
P 		3459.3
(3)
P 		2551.1
(0)
P 		1673.5
(-2.8)
P 		1623.3
(-3)
P 		1836
avr 1829.3
(-1.8) 		2594
(0.5) 		3419.2
(3) 		2363.3
(-0.2) 		1567.5
(-2.6) 		1449.2
(-3) 		1970
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1082
1 2 3 4 range
A 848.9
(3)
P 		529.4
(0.7)
P 		807.2
(2.7)
P 		1.8
(-3)
A 		847
B 716.1
(3)
P 		696.7
(2.8)
P 		676
(2.7)
P 		9.4
(-3)
P 		707
C 759.2
(1.2)
P 		755.4
(1.2)
P 		1083.8
(3)
P 		6.9
(-3)
A 		1077
avr 774.7
(2.4) 		660.5
(1.6) 		855.7
(3) 		6
(-3) 		850

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 635
1 2 3 4 5 6 range
A 358.3
(-2.7)
P 		957.3
(3)
P 		774.7
(1.3)
P 		601.9
(-0.4)
P 		468.7
(-1.6)
P 		322.1
(-3)
P 		635
B 629.1
(-1.1)
P 		863.7
(3)
P 		787
(1.7)
P 		573.7
(-2.1)
P 		599.7
(-1.6)
P 		522.5
(-3)
P 		341
C 643.5
(-0.9)
P 		761.4
(1.1)
P 		880.4
(3)
P 		513
(-3)
P 		541.5
(-2.5)
P 		543.4
(-2.5)
P 		367
avr 543.6
(-1.8) 		860.8
(3) 		814
(2.3) 		562.9
(-1.5) 		536.6
(-1.9) 		462.7
(-3) 		398
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175077_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28217
Sequence Type Exemplar sequence
Representative Public ID CEK008F3R NCBI
Target Description CEK008F3R_rc /REP_DB=TREMBL Accession /GB=D27079 /CHR=2 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk8f3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026749(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026749 NCBI Caenorhabditis elegans C05D12.3 (C05D12.3) mRNA, complete cds. 11/11 None
SNAP00000031675 ENSEMBL cdna:SNAP chromosome:CEL140:II:11426425:11430177:1 11/11 None
GENEFINDER00000031685 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11418219:11430177:1 11/11 None
C05D12.3 ENSEMBL cdna:known chromosome:CEL140:II:11425174:11430227:1 gene:C05D12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064033 4/11 Cross Hyb Matching Probes None
C05D12.4 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11429777-11430202(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05D12.3
Entrez Gene 174742 Entrez gene
SwissProt Q6A4V9 EMBL-EBI
WormBase CE36974 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH10768 Hypothetical protein C05D12.3 [Caenorhabditis elegans] ref|NP_001021920.1| C05D12.3 [Caenorhabditis elegans] 0.0
blast CAE59510 Hypothetical protein CBG02899 [Caenorhabditis briggsae] 0.0
blast CAA90754 Hypothetical protein C05D12.2 [Caenorhabditis elegans] ref|NP_496433.2| C05D12.2 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175077_S_AT
gtctactattatcagcactcaccagcaggtaccctctgtctgtcatggagaacaagtcga
taaatatggtcaatgtgtttgtcctgaaagatacactggagaatactgctgggatagaat
atgtgcatcgggtgcaactctctcgtatggaatttgtagttgctcttcgggattttatgg
tgatttttgtgaacttgaactgctaatgcctaatgctacaactacatcactgatcccgga
aacaactactaagactggatcaaatattgcgcgtttatctgtcattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTACTATTATCAGCACTCACCAG 659 469 48 Antisense
ATATGGTCAATGTGTTTGTCCTGAA 568 21 111 Antisense
GATACACTGGAGAATACTGCTGGGA 162 423 137 Antisense
TATGTGCATCGGGTGCAACTCTCTC 395 655 167 Antisense
GCAACTCTCTCGTATGGAATTTGTA 373 319 181 Antisense
GTAGTTGCTCTTCGGGATTTTATGG 570 453 203 Antisense
TGTGAACTTGAACTGCTAATGCCTA 127 551 235 Antisense
ACTGCTAATGCCTAATGCTACAACT 238 99 246 Antisense
TGCTACAACTACATCACTGATCCCG 124 581 261 Antisense
ACTGATCCCGGAAACAACTACTAAG 112 97 276 Antisense
ATATTGCGCGTTTATCTGTCATTAT 179 19 311 Antisense
Sequence Source Affymetrix Proprietary Database