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[175075_s_at]

Description C55189_rc /REP_DB=TREMBL Accession /GB=C55189 /CHR=1 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk350d10 : 3prime end, single read.
Cluster 6grp_total > 76      4grp_total > 12      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 6.7
(-3)
A 		24.9
(-1.2)
A 		16.2
(-2)
A 		66.4
(3)
A 		60
B 38.9
(2.3)
A 		35.8
(1.8)
A 		1.9
(-3)
A 		43.9
(3)
A 		42
C 25.1
(-1.1)
A 		1.3
(-3)
A 		0.8
(-3)
A 		76.3
(3)
P 		76
avr 23.6
(-1.1) 		20.7
(-1.5) 		6.3
(-3) 		62.2
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 18.8
(3)
A 		1
(-3)
A 		8.4
(-0.5)
A 		6.7
(-1.1)
A 		17.9
(2.7)
A 		8
(-0.6)
A 		18
B 11.2
(-1.9)
A 		15.9
(-0.5)
A 		27.6
(3)
A 		21.4
(1.1)
A 		7.7
(-3)
A 		22.6
(1.5)
A 		20
C 3.7
(-2.7)
A 		24.8
(1.5)
A 		2.2
(-3)
A 		14
(-0.7)
A 		15.6
(-0.4)
A 		32.6
(3)
A 		30
avr 11.2
(-3) 		13.9
(-1.4) 		12.7
(-2.1) 		14
(-1.3) 		13.7
(-1.5) 		21.1
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.4
(-3)
A 		5.4
(-0.5)
A 		4.2
(-1.5)
A 		9.7
(3)
A 		7
B 12.4
(3)
A 		8.8
(1.2)
A 		0.4
(-3)
A 		9.4
(1.5)
A 		12
C 8.3
(0.8)
A 		0.4
(-3)
A 		0.3
(-3)
A 		12.9
(3)
P 		13
avr 7.7
(1) 		4.9
(-0.8) 		1.6
(-3) 		10.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.5
(0.7)
A 		0.4
(-3)
A 		1.8
(-1.3)
A 		1.7
(-1.4)
A 		5.4
(3)
A 		2
(-1.1)
A 		5
B 3.9
(-2.1)
A 		5.3
(-0.5)
A 		6.7
(1.1)
A 		5.7
(-0.1)
A 		3.1
(-3)
A 		8.4
(3)
A 		5
C 1.4
(-2.5)
A 		7.6
(1.1)
A 		0.6
(-3)
A 		2.8
(-1.7)
A 		5.1
(-0.4)
A 		10.9
(3)
A 		10
avr 2.9
(-3) 		4.4
(-0.9) 		3
(-2.9) 		3.4
(-2.3) 		4.5
(-0.7) 		7.1
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175075_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28209
Sequence Type Exemplar sequence
Representative Public ID C55189 NCBI
Target Description C55189_rc /REP_DB=TREMBL Accession /GB=C55189 /CHR=1 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk350d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C55189
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C55189 C55189_rc /REP_DB=TREMBL Accession /GB=C55189 /CHR=1 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk350d10 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058987 11/11 Negative Strand Matching Probes A 
Y119C1B.1 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4554857-4555194(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175075_S_AT
tcttcgaagatctcccagacaacttcttactcggttttgtagtctttcttgaagaagatc
tcaatggatctttcgaactcttgatctttttcaagctcttcggagaagcagaatccgcca
tatcacttctcaacatcttctgctttttcgacgtggatttatcttttgaagggaccgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCGAAGATCTCCCAGACAACTT 595 615 50 Antisense
CCAGACAACTTCTTACTCGGTTTTG 544 251 64 Antisense
CTCGGTTTTGTAGTCTTTCTTGAAG 128 233 79 Antisense
GGATCTTTCGAACTCTTGATCTTTT 410 511 115 Antisense
TGATCTTTTTCAAGCTCTTCGGAGA 387 565 131 Antisense
GAGAAGCAGAATCCGCCATATCACT 136 391 152 Antisense
AAGCAGAATCCGCCATATCACTTCT 356 151 155 Antisense
TTCTCAACATCTTCTGCTTTTTCGA 654 691 176 Antisense
ATCTTCTGCTTTTTCGACGTGGATT 583 29 184 Antisense
GCTTTTTCGACGTGGATTTATCTTT 370 303 191 Antisense
GATTTATCTTTTGAAGGGACCGAAT 317 237 205 Antisense
Sequence Source Affymetrix Proprietary Database