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[175074_s_at]

Description C56917_rc /REP_DB=TREMBL Accession /GB=C56917 /CHR=2 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk307f11 : 3prime end, single read.
Cluster 6grp_total > 98      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 16.6
(-3)
A 		54.9
(-1.7)
A 		103.1
(0)
P 		189.5
(3)
P 		173
B 47.4
(-2.9)
A 		45.3
(-3)
A 		93.1
(-1.7)
A 		265.2
(3)
P 		220
C 49.5
(-3)
A 		68.2
(-2.3)
A 		103.8
(-1)
P 		211.4
(3)
P 		162
avr 37.8
(-3) 		56.1
(-2.4) 		100
(-1) 		222
(3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2367
1 2 3 4 5 6 range
A 49.2
(-3)
A 		58.1
(-3)
A 		86.5
(-2.9)
P 		261.1
(-2.4)
P 		1535.5
(0.9)
P 		2334.1
(3)
P 		2285
B 15.3
(-3)
A 		24.7
(-3)
A 		57.3
(-2.9)
A 		232.2
(-2.4)
P 		1911.1
(2.1)
P 		2239.9
(3)
P 		2225
C 42.8
(-2.9)
A 		19.7
(-3)
A 		119.2
(-2.7)
P 		276.5
(-2.3)
P 		1929.3
(1.9)
P 		2382
(3)
P 		2362
avr 35.8
(-3) 		34.2
(-3) 		87.7
(-2.9) 		256.6
(-2.4) 		1792
(1.6) 		2318.7
(3) 		2285
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 6
(-3)
A 		11.9
(-1.4)
A 		26.9
(2.8)
P 		27.7
(3)
P 		22
B 15.1
(-2.5)
A 		11.2
(-3)
A 		21.6
(-1.6)
A 		56.5
(3)
P 		45
C 16.4
(-3)
A 		19.6
(-2)
A 		36.2
(3)
P 		35.6
(2.8)
P 		20
avr 12.5
(-3) 		14.2
(-2.6) 		28.2
(0.4) 		39.9
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 830
1 2 3 4 5 6 range
A 9.1
(-3)
A 		20.7
(-2.9)
A 		18.8
(-2.9)
P 		66.2
(-2.4)
P 		463.3
(1.9)
P 		568.3
(3)
P 		559
B 5.3
(-3)
A 		8.2
(-3)
A 		13.9
(-2.9)
A 		61.5
(-2.6)
P 		776.4
(2.6)
P 		835.3
(3)
P 		830
C 15.9
(-2.9)
A 		6
(-3)
A 		30.3
(-2.8)
P 		55.6
(-2.6)
P 		624.3
(1.7)
P 		797.4
(3)
P 		791
avr 10.1
(-3) 		11.6
(-3) 		21
(-2.9) 		61.1
(-2.6) 		621.3
(2.1) 		733.7
(3) 		724
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175074_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28220
Sequence Type Exemplar sequence
Representative Public ID C56917 NCBI
Target Description C56917_rc /REP_DB=TREMBL Accession /GB=C56917 /CHR=2 /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk307f11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063204 NCBI Caenorhabditis elegans F18A1.7 (F18A1.7) mRNA, complete cds. 11/11 A 
SNAP00000013711 ENSEMBL cdna:SNAP chromosome:CEL140:II:7662727:7663672:-1 11/11 None
GENEFINDER00000013719 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7662727:7663672:-1 11/11 None
F18A1.7.1 ENSEMBL cdna:known chromosome:CEL140:II:7662688:7663674:-1 gene:F18A1.7 11/11 None
F18A1.7.2 ENSEMBL cdna:known chromosome:CEL140:II:7662688:7663672:-1 gene:F18A1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7663213-7663493(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18A1.7
Entrez Gene 174237 Entrez gene
SwissProt Q19536 EMBL-EBI
WormBase CE32628 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB63403 Hypothetical protein F18A1.7 [Caenorhabditis elegans] ref|NP_495605.2| F18A1.7 [Caenorhabditis elegans] 1.0E-145
blast CAA10465 F18A1.7 protein [Caenorhabditis briggsae] emb|CAA10309.1| F18A1.7 protein [Caenorhabditis briggsae] emb|CAE67509.1| Hypothetical protein CBG13025 [Caenorhabditis briggsae] 1.0E-128
Sequence
Target Sequence 
>C. ELEGANS:175074_S_AT
ccgcgctcttggagttccatattgcatgcgaaagtgcatcgacccgttcatcaattctac
gacgtctctgtggaacatgaagaatgttgtacatcaagctcgcaaagtctgtggtcatca
tgcacaggctatcacttgtctgaagaaagaacagtactgtgatcacaacaagctcttcgc
aaaagccagcagcagtgttgaatatatgtgtgccacaaagcacgttctgtttgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCGCTCTTGGAGTTCCATATTGC 684 261 24 Antisense
ATGCGAAAGTGCATCGACCCGTTCA 505 39 49 Antisense
GACCCGTTCATCAATTCTACGACGT 618 381 64 Antisense
TCTACGACGTCTCTGTGGAACATGA 582 613 79 Antisense
GAATGTTGTACATCAAGCTCGCAAA 414 331 105 Antisense
AGCTCGCAAAGTCTGTGGTCATCAT 15 81 120 Antisense
TGGTCATCATGCACAGGCTATCACT 200 553 135 Antisense
GCACAGGCTATCACTTGTCTGAAGA 101 317 145 Antisense
CAAGCTCTTCGCAAAAGCCAGCAGC 79 187 192 Antisense
AAGCCAGCAGCAGTGTTGAATATAT 41 149 206 Antisense
GCCACAAAGCACGTTCTGTTTGAGC 67 279 235 Antisense
Sequence Source Affymetrix Proprietary Database