[Home] | [Total List]

[175072_s_at]

Description CEK134F5R_rc /REP_DB=TREMBL Accession /GB=D65322 /CHR=X /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk134f5 : 3prime end, single read.
Cluster 6grp_total > 04      4grp_total > 50      6grp_cgc > 42      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 61.7
(-1.7)
P 		140.8
(3)
M 		83.9
(-0.4)
P 		39.4
(-3)
A 		101
B 44.7
(-3)
P 		106
(3)
A 		73.9
(-0.1)
P 		57.6
(-1.7)
A 		61
C 66.2
(-0.6)
A 		159
(3)
P 		119.4
(1.5)
P 		2.5
(-3)
A 		157
avr 57.5
(-1.6) 		135.3
(3) 		92.4
(0.5) 		33.2
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 43.1
(-0)
A 		66.8
(3)
P 		27.4
(-2)
A 		41.9
(-0.2)
A 		44.7
(0.2)
A 		19.9
(-3)
A 		47
B 17.3
(-0.4)
A 		37.6
(3)
A 		28.6
(1.5)
A 		1.4
(-3)
A 		31.3
(2)
A 		3.9
(-2.6)
A 		36
C 55.4
(3)
P 		10.2
(-3)
A 		34.7
(0.3)
A 		31.2
(-0.2)
A 		34.9
(0.3)
A 		14.3
(-2.5)
A 		45
avr 38.6
(3) 		38.2
(2.9) 		30.2
(1.1) 		24.8
(-0.2) 		37
(2.6) 		12.7
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 22.5
(1)
P 		30.6
(3)
M 		21.9
(0.9)
P 		5.8
(-3)
A 		25
B 14.3
(-2.1)
P 		26.2
(3)
A 		17.1
(-0.9)
P 		12.3
(-3)
A 		14
C 21.9
(-0.2)
A 		45.7
(3)
P 		41.6
(2.5)
P 		0.4
(-3)
A 		45
avr 19.6
(-0.1) 		34.2
(3) 		26.9
(1.4) 		6.2
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 7.9
(-2)
A 		23.8
(3)
P 		6
(-2.6)
A 		10.6
(-1.2)
A 		13.5
(-0.3)
A 		4.8
(-3)
A 		19
B 6
(-0.3)
A 		12.5
(2.9)
A 		6.9
(0.2)
A 		0.4
(-3)
A 		12.7
(3)
A 		1.5
(-2.5)
A 		12
C 20.5
(3)
P 		3.1
(-3)
A 		8.8
(-1)
A 		6.3
(-1.9)
A 		11.3
(-0.2)
A 		4.8
(-2.4)
A 		17
avr 11.5
(2) 		13.1
(3) 		7.2
(-0.8) 		5.8
(-1.7) 		12.5
(2.6) 		3.7
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175072_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28251
Sequence Type Exemplar sequence
Representative Public ID CEK134F5R NCBI
Target Description CEK134F5R_rc /REP_DB=TREMBL Accession /GB=D65322 /CHR=X /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk134f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078132(11), NM_001029498(11), NM_001029499(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078132 NCBI Caenorhabditis elegans protein KINase family member (kin-20) (kin-20) mRNA, complete cds. 11/11 None
NM_001029498 NCBI Caenorhabditis elegans protein KINase family member (kin-20) (kin-20) mRNA, complete cds. 11/11 None
NM_001029499 NCBI Caenorhabditis elegans protein KINase family member (kin-20) (kin-20) mRNA, complete cds. 11/11 None
SNAP00000014644 ENSEMBL cdna:SNAP chromosome:CEL140:X:15269574:15273609:-1 11/11 None
GENEFINDER00000014645 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15269574:15273645:-1 11/11 None
F46F2.2c ENSEMBL cdna:known chromosome:CEL140:X:15269137:15273600:-1 gene:F46F2.2 11/11 None
F46F2.2a ENSEMBL cdna:known chromosome:CEL140:X:15270848:15273645:-1 gene:F46F2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181620 4 3 NM_001029498 175072_s_at (11), 189608_at (11)
NM_001029499 175072_s_at (11)
NM_078132 175072_s_at (11), 189608_at (11)
NM_182447 189608_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15273362-15273664(-) 100.0 100.0
Public Domain and Genome References
Ensembl F46F2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93775 Hypothetical protein F46F2.2a [Caenorhabditis elegans] ref|NP_510533.3| protein KINase family member (kin-20) [Caenorhabditis elegans] gb|AAW21316.1| casein kinase I epsilon/delta kin-20C [Caenorhabditis elegans] gb|AAW21314.1| casein kinase I epsilon/delta kin-20A [Caenorhabditis elegans] 0.0
blast CAI79241 Hypothetical protein F46F2.2d [Caenorhabditis elegans] ref|NP_001024670.1| protein KINase family member (kin-20) [Caenorhabditis elegans] 0.0
blast CAH60762 Hypothetical protein F46F2.2c [Caenorhabditis elegans] ref|NP_001024669.1| protein KINase family member (kin-20) [Caenorhabditis elegans] 0.0
blast Q20471 Putative casein kinase I F46F2.2 in chromosome X 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.0E-38
Pfam IPR000719 EMBL-EBI Protein kinase 4.0E-38
Pfam IPR000719 EMBL-EBI Protein kinase 4.0E-38
Sequence
Target Sequence 
>C. ELEGANS:175072_S_AT
agcaacctggcacaacaacacgagcacaccgatggacaccaccgaaccagccacgaacag
tcataatcccggtgaaacggcggtgatcggtggcccagaggccctattattaccatctgg
cagcgggccagaggaaatgaataggcaccctctgttgatggcgcaagcacacggagaaca
cc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAACCTGGCACAACAACACGAGC 428 73 100 Antisense
ACAACACGAGCACACCGATGGACAC 185 113 114 Antisense
GAACCAGCCACGAACAGTCATAATC 574 345 143 Antisense
AACAGTCATAATCCCGGTGAAACGG 636 17 155 Antisense
GTGAAACGGCGGTGATCGGTGGCCC 323 459 171 Antisense
TCGGTGGCCCAGAGGCCCTATTATT 654 585 186 Antisense
GAGGCCCTATTATTACCATCTGGCA 389 405 197 Antisense
TACCATCTGGCAGCGGGCCAGAGGA 552 647 210 Antisense
TGAATAGGCACCCTCTGTTGATGGC 114 575 237 Antisense
CCTCTGTTGATGGCGCAAGCACACG 543 265 248 Antisense
ATGGCGCAAGCACACGGAGAACACC 219 53 257 Antisense
Sequence Source Affymetrix Proprietary Database