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[175071_s_at]

Description CEK121A6R_rc /REP_DB=TREMBL Accession /GB=D66716 /CHR=X /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk121a6 : 3prime end, single read.
Cluster 6grp_total > 57      4grp_total > 03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 4.4
(-3)
A 		17.3
(-2.3)
A 		5.7
(-2.9)
A 		121.6
(3)
A 		117
B 25.1
(3)
A 		9
(-1.3)
A 		2.5
(-3)
A 		4.8
(-2.4)
A 		23
C 18.2
(-1.6)
A 		2.8
(-3)
A 		3.3
(-3)
A 		69.2
(3)
A 		66
avr 15.9
(-1.8) 		9.7
(-2.4) 		3.8
(-3) 		65.2
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 32.2
(0.8)
A 		26.8
(0.1)
A 		25.8
(-0)
A 		3.2
(-3)
A 		6.8
(-2.5)
A 		48.9
(3)
A 		46
B 36.2
(-1)
A 		29.8
(-1.4)
A 		2.7
(-3)
A 		5
(-2.9)
A 		16.7
(-2.2)
A 		103.8
(3)
P 		101
C 40.1
(-0.2)
A 		36.6
(-0.5)
A 		1.5
(-3)
A 		4.1
(-2.8)
A 		4.5
(-2.8)
A 		84.8
(3)
P 		83
avr 36.2
(-0.4) 		31.1
(-0.8) 		10
(-2.5) 		4.1
(-3) 		9.3
(-2.6) 		79.2
(3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.6
(-3)
A 		3.7
(-2.2)
A 		1.5
(-3)
A 		17.8
(3)
A 		16
B 8
(3)
A 		2.2
(-1.7)
A 		0.6
(-3)
A 		1
(-2.7)
A 		7
C 6
(-0.1)
A 		0.8
(-3)
A 		1.1
(-2.8)
A 		11.7
(3)
A 		11
avr 5.2
(-0.3) 		2.2
(-2.3) 		1.1
(-3) 		10.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 5.9
(-0.2)
A 		9.5
(1.7)
A 		5.6
(-0.4)
A 		0.8
(-3)
A 		2.1
(-2.3)
A 		11.9
(3)
A 		11
B 12.6
(-1.1)
A 		9.9
(-1.5)
A 		0.6
(-3)
A 		1.3
(-2.9)
A 		6.8
(-2)
A 		38.7
(3)
P 		38
C 14.9
(0.1)
A 		11.2
(-0.7)
A 		0.4
(-3)
A 		0.8
(-2.9)
A 		1.4
(-2.8)
A 		28.4
(3)
P 		28
avr 11.1
(-0.6) 		10.2
(-0.8) 		2.2
(-2.7) 		1
(-3) 		3.4
(-2.4) 		26.3
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175071_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28247
Sequence Type Exemplar sequence
Representative Public ID CEK121A6R NCBI
Target Description CEK121A6R_rc /REP_DB=TREMBL Accession /GB=D66716 /CHR=X /FEA=Genomic Cluster /REVCOMP /DEF=C.elegans cDNA clone yk121a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076868(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076868 NCBI Caenorhabditis elegans F48E3.6 (F48E3.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000040278 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7495874:7502528:-1 11/11 None
SNAP00000040273 ENSEMBL cdna:SNAP chromosome:CEL140:X:7501641:7502528:-1 11/11 None
F48E3.6 ENSEMBL cdna:known chromosome:CEL140:X:7501178:7502453:-1 gene:F48E3.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7502224-7502528(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48E3.6
Entrez Gene 181008 Entrez gene
SwissProt Q9GP99 EMBL-EBI
WormBase CE02753 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99954 Hypothetical protein F48E3.3 [Caenorhabditis elegans] ref|NP_509268.1| F48E3.3 [Caenorhabditis elegans] 0.0
blast CAE70223 Hypothetical protein CBG16703 [Caenorhabditis briggsae] 0.0
blast XP_594485 PREDICTED: similar to UDP-glucose:glycoprotein glucosyltransferase 1 precursor (UDP-glucose ceramide glucosyltransferase-like 1) (UDP--Glc:glycoprotein glucosyltransferase) (HUGT1) isoform 1 [Bos taurus] 0.0
blast AAF99956 Hypothetical protein F48E3.6 [Caenorhabditis elegans] ref|NP_509269.1| F48E3.6 [Caenorhabditis elegans] 1.0E-147
blast AAF99956 Hypothetical protein F48E3.6 [Caenorhabditis elegans] ref|NP_509269.1| F48E3.6 [Caenorhabditis elegans] 1.0E-127
blast CAE70224 Hypothetical protein CBG16704 [Caenorhabditis briggsae] 3.0E-26
blast CAE70224 Hypothetical protein CBG16704 [Caenorhabditis briggsae] 6.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR009448 EMBL-EBI UDP-glucose:Glycoprotein Glucosyltransferase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509269.1 5 15-32,57-76,86-108,113-135,145-167
F48E3.6 5 15-32,57-76,86-108,113-135,145-167
GENEFINDER00000040278 7 7-26,41-60,81-101,111-133,138-160,170-192,275-297
SNAP00000040273 6 7-26,41-60,81-101,111-133,138-160,170-192
Sequence
Target Sequence 
>C. ELEGANS:175071_S_AT
atgggcaaacccagtacggtacagaatctatggaaccctgaagagttttatccagcaccc
ttaattgctgcacttttctgtatttttgcttgcgcttcaaccatcaaaaagcgagttgca
actagaccaagcgaccttcgagaacttggtacttcatggaaaagaagccttattgtagga
tatattcttgtcattggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGCAAACCCAGTACGGTACAGA 95 3 89 Antisense
ACGGTACAGAATCTATGGAACCCTG 593 89 104 Antisense
TATGGAACCCTGAAGAGTTTTATCC 483 653 117 Antisense
AGTTTTATCCAGCACCCTTAATTGC 478 51 132 Antisense
AATTGCTGCACTTTTCTGTATTTTT 191 179 151 Antisense
TCTGTATTTTTGCTTGCGCTTCAAC 215 609 165 Antisense
TTGCTTGCGCTTCAACCATCAAAAA 236 703 174 Antisense
GCGAGTTGCAACTAGACCAAGCGAC 271 289 199 Antisense
CAACTAGACCAAGCGACCTTCGAGA 275 185 207 Antisense
GCGACCTTCGAGAACTTGGTACTTC 422 289 219 Antisense
TGTAGGATATATTCTTGTCATTGGT 113 561 262 Antisense
Sequence Source Affymetrix Proprietary Database