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[175070_at]

Description AV187824 /REP_DB=TREMBL Accession /GB=AV187824 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk516c8 : 5prime end, single read.
Cluster 6grp_total > 75      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 163.3
(-1.5)
A 		160
(-1.6)
A 		115.4
(-3)
A 		312.4
(3)
A 		197
B 169.2
(0.3)
A 		175.7
(2.7)
A 		176.4
(3)
A 		160.6
(-3)
A 		16
C 121
(-3)
A 		143
(-2.1)
A 		144.1
(-2.1)
A 		267.2
(3)
A 		146
avr 151.2
(-2.7) 		159.6
(-2.2) 		145.3
(-3) 		246.7
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 339
1 2 3 4 5 6 range
A 144.7
(-1)
A 		81.9
(-3)
A 		205.5
(1)
A 		164.1
(-0.3)
A 		266.7
(3)
M 		260.8
(2.8)
P 		185
B 137.5
(-3)
A 		193.3
(-1.7)
A 		230.2
(-0.8)
A 		216.8
(-1.2)
A 		190.6
(-1.8)
M 		395.2
(3)
P 		258
C 56.1
(-3)
A 		157.7
(-0.6)
M 		202.2
(0.4)
A 		230.8
(1.1)
A 		211.9
(0.7)
P 		311.2
(3)
P 		255
avr 112.8
(-3) 		144.3
(-2.1) 		212.6
(-0.1) 		203.9
(-0.4) 		223.1
(0.2) 		322.4
(3) 		210
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 59.5
(3)
A 		34.7
(-2.1)
A 		30.2
(-3)
A 		45.7
(0.2)
A 		29
B 53.9
(3)
A 		43.4
(-0.2)
A 		40.9
(-1)
A 		34.2
(-3)
A 		20
C 40
(-3)
A 		41.1
(-2.4)
A 		50.2
(3)
A 		45.1
(0)
A 		10
avr 51.1
(3) 		39.7
(-3) 		40.4
(-2.6) 		41.7
(-1.9) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 26.7
(-3)
A 		29.1
(-2.7)
A 		44.7
(-1)
A 		41.6
(-1.3)
A 		80.5
(3)
M 		63.5
(1.1)
P 		54
B 47.9
(-3)
A 		64.3
(-2)
A 		55.9
(-2.5)
A 		57.4
(-2.4)
A 		77.5
(-1.2)
M 		147.4
(3)
P 		100
C 20.8
(-3)
A 		48.1
(-1)
M 		51.5
(-0.8)
A 		46.4
(-1.2)
A 		68.6
(0.4)
P 		104.2
(3)
P 		83
avr 31.8
(-3) 		47.2
(-1.7) 		50.7
(-1.5) 		48.5
(-1.6) 		75.5
(0.6) 		105
(3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175070_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20880
Sequence Type Exemplar sequence
Representative Public ID AV187824 NCBI
Target Description AV187824 /REP_DB=TREMBL Accession /GB=AV187824 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk516c8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067094(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067094 NCBI Caenorhabditis elegans Y66D12A.7 (Y66D12A.7) mRNA, complete cds. 11/11 None
SNAP00000020815 ENSEMBL cdna:SNAP chromosome:CEL140:III:11562549:11580346:-1 11/11 None
GENEFINDER00000020829 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11579157:11580331:-1 11/11 None
Y66D12A.7 ENSEMBL cdna:known chromosome:CEL140:III:11579157:11580336:-1 gene:Y66D12A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11579182-11579462(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y66D12A.7
Entrez Gene 176590 Entrez gene
SwissProt Q9BI40 EMBL-EBI
WormBase CE26457 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35907 Hypothetical protein Y66D12A.7 [Caenorhabditis elegans] ref|NP_499495.1| Y66D12A.7 [Caenorhabditis elegans] 3.0E-97
blast CAC35907 Hypothetical protein Y66D12A.7 [Caenorhabditis elegans] ref|NP_499495.1| Y66D12A.7 [Caenorhabditis elegans] 7.0E-93
blast CAC35907 Hypothetical protein Y66D12A.7 [Caenorhabditis elegans] ref|NP_499495.1| Y66D12A.7 [Caenorhabditis elegans] 8.0E-91
blast CAE67690 Hypothetical protein CBG13258 [Caenorhabditis briggsae] 2.0E-70
blast CAE67690 Hypothetical protein CBG13258 [Caenorhabditis briggsae] 2.0E-67
blast CAE67690 Hypothetical protein CBG13258 [Caenorhabditis briggsae] 4.0E-66
blast AAO41185 CG33649-PA, isoform A [Drosophila melanogaster] ref|NP_788041.1| CG33084-PB, isoform B [Drosophila melanogaster] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:175070_AT
ccaagcgtctggagctcgtggatgtcgagggcgtcgagccgatgcacaccgtttgggaag
atcaagagtgtccgacgtttgaggatgttgaagaggatccgttgccgattgaggaggttt
ttcggaatgctagcctccgattcgacgatttctttgtgacaccaccgggaaatctgccgc
tcgagtcgaaggaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAAGCGTCTGGAGCTCGTGGATGT 453 277 33 Antisense
TCGTGGATGTCGAGGGCGTCGAGCC 372 603 48 Antisense
GCCGATGCACACCGTTTGGGAAGAT 300 283 70 Antisense
GAAGATCAAGAGTGTCCGACGTTTG 694 335 89 Antisense
GAGTGTCCGACGTTTGAGGATGTTG 472 401 98 Antisense
GAGGATCCGTTGCCGATTGAGGAGG 284 403 125 Antisense
GAGGTTTTTCGGAATGCTAGCCTCC 320 403 146 Antisense
TAGCCTCCGATTCGACGATTTCTTT 157 651 163 Antisense
TTCGACGATTTCTTTGTGACACCAC 46 697 173 Antisense
TTGTGACACCACCGGGAAATCTGCC 635 703 186 Antisense
AATCTGCCGCTCGAGTCGAAGGAAC 582 169 203 Antisense
Sequence Source Affymetrix Proprietary Database