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[175069_at]

Description AU109707 /REP_DB=TREMBL Accession /GB=AU109707 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710c5 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 48      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 81      6grp_total > 38      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1140
1 2 3 4 range
A 315.8
(-2.2)
P 		334.3
(-2)
P 		197.6
(-3)
P 		1044.1
(3)
P 		847
B 299.1
(-2.5)
P 		232.1
(-2.9)
P 		212.6
(-3)
P 		1187.4
(3)
P 		975
C 394.1
(-2.1)
P 		224.2
(-3)
P 		232.9
(-3)
P 		1337.1
(3)
P 		1113
avr 336.3
(-2.2) 		263.5
(-2.7) 		214.4
(-3) 		1189.5
(3) 		975

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 324.2
(3)
P 		237
(-0.6)
P 		178.5
(-3)
P 		202.4
(-2)
P 		269.1
(0.7)
P 		282.5
(1.3)
P 		146
B 304.7
(2.8)
P 		306.1
(2.9)
P 		307.3
(3)
P 		230.6
(-3)
P 		244.3
(-1.9)
P 		307
(3)
P 		77
C 354.9
(3)
P 		305.8
(1.9)
P 		165.5
(-1.1)
P 		76.7
(-3)
P 		211.3
(-0.1)
P 		340.1
(2.7)
P 		278
avr 327.9
(3) 		283
(1.3) 		217.1
(-1.2) 		169.9
(-3) 		241.6
(-0.3) 		309.9
(2.3) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 115
(0.8)
P 		72.6
(-1.8)
P 		51.6
(-3)
P 		152.8
(3)
P 		101
B 95.4
(-1.6)
P 		57.3
(-2.8)
P 		49.3
(-3)
P 		253
(3)
P 		204
C 130.5
(-0.5)
P 		64.5
(-3)
P 		81.2
(-2.4)
P 		225.5
(3)
P 		161
avr 113.6
(-0.9) 		64.8
(-2.8) 		60.7
(-3) 		210.4
(3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 59.8
(-0.2)
P 		84.3
(3)
P 		38.9
(-3)
P 		51.3
(-1.4)
P 		81.2
(2.6)
P 		68.8
(1)
P 		45
B 106
(2)
P 		101.9
(1.6)
P 		74.6
(-1.5)
P 		61.1
(-3)
P 		99.3
(1.3)
P 		114.5
(3)
P 		53
C 131.5
(3)
P 		93.3
(1)
P 		42.1
(-1.6)
P 		15.4
(-3)
P 		68.4
(-0.3)
P 		113.9
(2.1)
P 		116
avr 99.1
(3) 		93.2
(2.4) 		51.9
(-2) 		42.6
(-3) 		83
(1.3) 		99.1
(3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175069_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21845
Sequence Type Exemplar sequence
Representative Public ID AU109707 NCBI
Target Description AU109707 /REP_DB=TREMBL Accession /GB=AU109707 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710c5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075286(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075286 NCBI Caenorhabditis elegans Y80D3A.10 (Y80D3A.10) mRNA, complete cds. 11/11 None
GENEFINDER00000017387 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18906350:18909800:1 10/11 None
Y80D3A.10 ENSEMBL cdna:known chromosome:CEL140:V:18906345:18908825:1 gene:Y80D3A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18907755-18908736(+) 86.15 100.0
Public Domain and Genome References
Gene Title
Ensembl Y80D3A.10
Entrez Gene 180235 Entrez gene
SwissProt Q95ZI9 EMBL-EBI
WormBase CE27787 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42383 Hypothetical protein Y80D3A.10 [Caenorhabditis elegans] ref|NP_507687.1| Y80D3A.10 [Caenorhabditis elegans] 4.0E-41
blast CAC42383 Hypothetical protein Y80D3A.10 [Caenorhabditis elegans] ref|NP_507687.1| Y80D3A.10 [Caenorhabditis elegans] 2.0E-38
blast CAE72979 Hypothetical protein CBG20321 [Caenorhabditis briggsae] 4.0E-28
blast CAE72979 Hypothetical protein CBG20321 [Caenorhabditis briggsae] 8.0E-26
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507687.1 1 5-27
Y80D3A.10 1 5-27
GENEFINDER00000017387 2 5-27,103-122
Sequence
Target Sequence 
>C. ELEGANS:175069_AT
atctgaccgaacaatgaaacgaagtgctctactgcaaccggagaacaatccagaatggaa
tcagttgggatgggcttggggaaagagaagcgctggaatggagatccctcaccgcgcggc
tcgagctcttcacccagtgaaaaagaaccccgattggcaggatttgggctttgcatgggg
ccgcaaataaatatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGACCGAACAATGAAACGAAGT 489 33 13 Antisense
GAAACGAAGTGCTCTACTGCAACCG 30 359 28 Antisense
CTCTACTGCAACCGGAGAACAATCC 600 229 39 Antisense
GCAACCGGAGAACAATCCAGAATGG 10 319 46 Antisense
ATCAGTTGGGATGGGCTTGGGGAAA 94 27 72 Antisense
TTGGGGAAAGAGAAGCGCTGGAATG 220 483 88 Antisense
AGCGCTGGAATGGAGATCCCTCACC 408 81 101 Antisense
TCACCCAGTGAAAAAGAACCCCGAT 437 621 142 Antisense
GAACCCCGATTGGCAGGATTTGGGC 346 347 157 Antisense
GGATTTGGGCTTTGCATGGGGCCGC 260 509 172 Antisense
GCATGGGGCCGCAAATAAATATTTT 563 307 185 Antisense
Sequence Source Affymetrix Proprietary Database