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[175068_s_at]

Description AV195340 /REP_DB=TREMBL Accession /GB=AV195340 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk640f8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 56      6grp_total > 64      4grp_total > 48      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1294
1 2 3 4 range
A 1559.7
(-3)
P 		2336.1
(1.9)
P 		2515.4
(3)
P 		1788.1
(-1.6)
P 		956
B 1520.2
(-3)
P 		2211.2
(0.4)
P 		2745.4
(3)
P 		2168.2
(0.2)
P 		1225
C 1523.7
(-3)
P 		2241.1
(0.3)
P 		2813.8
(3)
P 		1992.5
(-0.8)
P 		1290
avr 1534.5
(-3) 		2262.8
(0.8) 		2691.5
(3) 		1982.9
(-0.7) 		1157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1931
1 2 3 4 5 6 range
A 1768.4
(-2.3)
P 		1881.1
(-1.9)
P 		3471.9
(3)
P 		2584.6
(0.2)
P 		1540.9
(-3)
P 		1987
(-1.6)
P 		1931
B 2041.4
(-1.2)
P 		2296.7
(0.4)
P 		2719
(3)
P 		2280
(0.3)
P 		1745.4
(-3)
P 		2310.5
(0.5)
P 		974
C 1946.8
(-0.7)
P 		2040.1
(-0.1)
P 		2535.3
(3)
P 		2495.8
(2.8)
P 		1581.4
(-3)
P 		2486.2
(2.7)
P 		954
avr 1918.9
(-1.6) 		2072.6
(-0.9) 		2908.7
(3) 		2453.5
(0.9) 		1622.6
(-3) 		2261.2
(-0) 		1286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 719
1 2 3 4 range
A 567.9
(1.6)
P 		507.1
(0.7)
P 		657.6
(3)
P 		261.7
(-3)
P 		396
B 484.8
(-2.2)
P 		546.1
(-0.1)
P 		636.2
(3)
P 		462
(-3)
P 		174
C 504.4
(-1.4)
P 		644.3
(-0.1)
P 		980.7
(3)
P 		336
(-3)
P 		645
avr 519
(-0.5) 		565.8
(0.1) 		758.2
(3) 		353.2
(-3) 		405

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 536
1 2 3 4 5 6 range
A 326
(-3)
P 		669
(1.8)
P 		756.1
(3)
P 		655.5
(1.6)
P 		465
(-1.1)
P 		483.8
(-0.8)
P 		430
B 710.3
(-0.5)
P 		764.5
(0.7)
P 		660.3
(-1.7)
P 		603.9
(-3)
P 		709.1
(-0.6)
P 		861.6
(3)
P 		258
C 721.6
(1)
P 		622.5
(-0.8)
P 		645.3
(-0.4)
P 		501.9
(-3)
P 		511.7
(-2.8)
P 		832.3
(3)
P 		330
avr 586
(-2.1) 		685.3
(1.5) 		687.2
(1.6) 		587.1
(-2.1) 		561.9
(-3) 		725.9
(3) 		164
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175068_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21633
Sequence Type Exemplar sequence
Representative Public ID AV195340 NCBI
Target Description AV195340 /REP_DB=TREMBL Accession /GB=AV195340 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk640f8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067751(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067751 NCBI Caenorhabditis elegans Y76B12C.3 (Y76B12C.3) mRNA, complete cds. 11/11 A 
SNAP00000007750 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1971725:1975539:1 11/11 None
Y76B12C.3 ENSEMBL cdna:known chromosome:CEL140:IV:1973705:1975609:1 gene:Y76B12C.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000007757 2/11 Cross Hyb Matching Probes None
GENEFINDER00000007768 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1974085-1975605(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y76B12C.3
Entrez Gene 176999 Entrez gene
SwissProt Q9N4C6 EMBL-EBI
WormBase CE28149 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.20706.1.S1_AT similar to 15 kDa selenoprotein isoform 1 precursor cfa
CANINE_2:CFAAFFX.30993.1.S1_S_AT similar to 15 kDa selenoprotein isoform 1 precursor cfa
CANINE_2:CFAAFFX.30994.1.S1_S_AT similar to 15 kDa selenoprotein isoform 1 precursor cfa
DROSOPHILA_2:1628883_AT dm
DROSGENOME1:148966_AT dm
HG-U133_PLUS_2:200902_AT 15 kDa selenoprotein hs
HG-U133A:200902_AT 15 kDa selenoprotein hs
HG-U133A_2:200902_AT 15 kDa selenoprotein hs
HG-FOCUS:200902_AT 15 kDa selenoprotein hs
HU35KSUBA:AA092376_AT 15 kDa selenoprotein hs
HU35KSUBC:RC_AA001402_AT 15 kDa selenoprotein hs
U133_X3P:G4759095_3P_AT 15 kDa selenoprotein hs
HG-U95AV2:38820_AT 15 kDa selenoprotein hs
HG-U95E:78899_AT 15 kDa selenoprotein hs
HU35KSUBC:RC_W90605_AT 15 kDa selenoprotein hs
MU11KSUBA:AA241085_S_AT selenoprotein mm
MG-U74AV2:96249_AT selenoprotein mm
MG-U74AV2:160360_AT selenoprotein mm
MOE430A:1448903_AT selenoprotein mm
MOUSE430A_2:1448903_AT selenoprotein mm
MOUSE430_2:1448903_AT selenoprotein mm
MOE430B:1454525_AT selenoprotein mm
MOUSE430_2:1454525_AT selenoprotein mm
MU19KSUBC:TC39133_AT Selenoprotein, mRNA (cDNA clone MGC:30351 IMAGE:5003585) mm
RG-U34B:RC_AA945698_AT selenoprotein rn
RAE230A:1398752_AT selenoprotein rn
RAT230_2:1398752_AT selenoprotein rn
Protein Similarities
Method ID Description E-Value
blast AAF36064 Hypothetical protein Y76B12C.3 [Caenorhabditis elegans] ref|NP_500152.1| Y76B12C.3 [Caenorhabditis elegans] 2.0E-77
blast AAF36064 Hypothetical protein Y76B12C.3 [Caenorhabditis elegans] ref|NP_500152.1| Y76B12C.3 [Caenorhabditis elegans] 5.0E-77
blast CAE74693 Hypothetical protein CBG22507 [Caenorhabditis briggsae] 2.0E-67
blast CAE74693 Hypothetical protein CBG22507 [Caenorhabditis briggsae] 4.0E-67
blast XP_394140 PREDICTED: similar to ENSANGP00000011457 [Apis mellifera] 2.0E-20
blast XP_394140 PREDICTED: similar to ENSANGP00000011457 [Apis mellifera] 6.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000007750 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:175068_S_AT
gaagtctgcgagtgcaatttggctcgattcccacaagttcaagcattcgtccataaggat
atggctcgtcaattcggtggaaaagtgaaagttaagcatgtacgaggtgtccgaccacaa
gttgcactgaaagatgccgattttaagacaaaagaggtgctcagcgttgagaaatgggat
accgatacgctcatcgactttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTCTGCGAGTGCAATTTGGCTC 352 335 16 Antisense
GCAATTTGGCTCGATTCCCACAAGT 642 321 29 Antisense
CATAAGGATATGGCTCGTCAATTCG 413 209 67 Antisense
TAAGCATGTACGAGGTGTCCGACCA 290 637 108 Antisense
TACGAGGTGTCCGACCACAAGTTGC 408 647 116 Antisense
GTGTCCGACCACAAGTTGCACTGAA 212 485 122 Antisense
GTTGCACTGAAAGATGCCGATTTTA 555 439 136 Antisense
GACAAAAGAGGTGCTCAGCGTTGAG 526 365 162 Antisense
GAGGTGCTCAGCGTTGAGAAATGGG 200 403 169 Antisense
GAAATGGGATACCGATACGCTCATC 346 361 186 Antisense
TACCGATACGCTCATCGACTTTTTC 195 647 195 Antisense
Sequence Source Affymetrix Proprietary Database