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[175067_at]

Description AV201798 /REP_DB=TREMBL Accession /GB=AV201798 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk541f8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 20      6grp_total > 16      4grp_total > 31      6grp_highest_sub > De      6grp_cgc > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 825
1 2 3 4 range
A 1037.1
(3)
P 		696.8
(-1.1)
P 		536.3
(-3)
P 		937.5
(1.8)
P 		501
B 1202.6
(3)
P 		529.2
(-1.9)
P 		377.9
(-3)
P 		689.6
(-0.7)
P 		825
C 969.8
(3)
P 		421
(-3)
P 		755
(0.7)
P 		620.6
(-0.8)
P 		549
avr 1069.8
(3) 		549
(-3) 		556.4
(-2.9) 		749.2
(-0.7) 		521

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1412
1 2 3 4 5 6 range
A 1920.1
(3)
P 		844.6
(-1.6)
P 		904.9
(-1.3)
P 		512.6
(-3)
P 		963.6
(-1.1)
P 		703.8
(-2.2)
P 		1408
B 1783.2
(3)
P 		1106
(-0.2)
P 		519.5
(-3)
P 		1094.8
(-0.3)
P 		850.2
(-1.4)
P 		799.5
(-1.7)
P 		1264
C 1088.6
(0.9)
P 		1409.5
(3)
P 		508.4
(-3)
P 		744.7
(-1.4)
P 		817.2
(-0.9)
P 		616.1
(-2.3)
P 		901
avr 1597.3
(3) 		1120
(-0) 		644.3
(-3) 		784
(-2.1) 		877
(-1.5) 		706.5
(-2.6) 		953
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 377.6
(3)
P 		151.3
(-2.6)
P 		140.2
(-2.9)
P 		137.2
(-3)
P 		240
B 383.5
(3)
P 		130.7
(-2.1)
P 		87.6
(-3)
P 		147
(-1.8)
P 		296
C 321
(3)
P 		121
(-2.5)
P 		263.1
(1.4)
P 		104.6
(-3)
P 		216
avr 360.7
(3) 		134.3
(-2.9) 		163.6
(-2.1) 		129.6
(-3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 494
1 2 3 4 5 6 range
A 354
(3)
P 		300.4
(1.6)
P 		197.1
(-1.2)
P 		130
(-3)
P 		290.8
(1.3)
P 		171.4
(-1.9)
P 		224
B 620.5
(3)
P 		368.2
(-0.1)
P 		126.1
(-3)
P 		290
(-1)
P 		345.4
(-0.3)
P 		298.1
(-0.9)
P 		494
C 403.5
(2.5)
P 		430.1
(3)
P 		129.4
(-3)
P 		149.8
(-2.6)
P 		264.4
(-0.3)
P 		206.2
(-1.5)
P 		301
avr 459.3
(3) 		366.2
(1.2) 		150.9
(-3) 		189.9
(-2.2) 		300.2
(-0.1) 		225.2
(-1.6) 		308
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175067_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21020
Sequence Type Exemplar sequence
Representative Public ID AV201798 NCBI
Target Description AV201798 /REP_DB=TREMBL Accession /GB=AV201798 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk541f8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027810(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027810 NCBI Caenorhabditis elegans UNCoordinated family member (unc-16) (unc-16) mRNA, complete cds. 11/11 None
ZK1098.10b ENSEMBL cdna:known chromosome:CEL140:III:9546154:9556401:1 gene:ZK1098.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176349 2 1 NM_001027810 175067_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9556037-9556360(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1098.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD45611 Hypothetical protein ZK1098.10b [Caenorhabditis elegans] ref|NP_001022981.1| UNCoordinated family member (unc-16) [Caenorhabditis elegans] gb|AAL23934.1| UNC-16 [Caenorhabditis elegans] sp|P34609|JIP_CAEEL JNK-interacting protein (JIP) (JNK MAP kinase scaffold protein) (Uncoordinated protein 16) 0.0
blast CAA80140 Hypothetical protein ZK1098.10a [Caenorhabditis elegans] ref|NP_741263.3| UNCoordinated family member (unc-16) [Caenorhabditis elegans] 0.0
blast CAE65181 Hypothetical protein CBG10054 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175067_AT
tcaacctcaatgctttgcataaccattcgttcttcttcattttgcattttgattcgattt
ctttttccaaaaggctttttctcaccactttccctgtctagaattcaattcaattaaaag
ttttaatgcatccaaaattcatgtaaattgtacattttcctacgaaatgtctaatattcg
gttgctccctccgtctcctctcttgtcatccctcaccctcccacttctaacgcattctag
tctctttttccaaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACCTCAATGCTTTGCATAACCA 92 629 25 Antisense
TGCATAACCATTCGTTCTTCTTCAT 659 577 40 Antisense
TCGTTCTTCTTCATTTTGCATTTTG 112 605 51 Antisense
GCATTTTGATTCGATTTCTTTTTCC 154 309 68 Antisense
TTCCAAAAGGCTTTTTCTCACCACT 443 699 89 Antisense
ACCACTTTCCCTGTCTAGAATTCAA 629 85 108 Antisense
GTTTTAATGCATCCAAAATTCATGT 368 447 144 Antisense
TGTAAATTGTACATTTTCCTACGAA 128 559 166 Antisense
ATGTCTAATATTCGGTTGCTCCCTC 671 47 191 Antisense
CTAACGCATTCTAGTCTCTTTTTCC 262 227 251 Antisense
CATTCTAGTCTCTTTTTCCAAACTT 290 213 257 Antisense
Sequence Source Affymetrix Proprietary Database