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[175066_at]

Description AV188776 /REP_DB=TREMBL Accession /GB=AV188776 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk528d6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 87      6grp_total > 86      4grp_total > 24      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 805
1 2 3 4 range
A 863.8
(-3)
P 		1219.7
(1)
P 		1398.9
(3)
P 		1370.4
(2.7)
P 		535
B 1316.7
(-2.3)
P 		1276.1
(-3)
P 		1491.7
(0.6)
P 		1631.6
(3)
P 		356
C 1017.2
(-3)
P 		1114.7
(-2.1)
P 		1272.8
(-0.6)
P 		1668.3
(3)
P 		651
avr 1065.9
(-3) 		1203.5
(-1.3) 		1387.8
(0.9) 		1556.8
(3) 		491

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 715
1 2 3 4 5 6 range
A 1185.9
(0.1)
P 		1162.4
(-0.1)
P 		858.7
(-3)
P 		960.8
(-2)
P 		1323.3
(1.4)
P 		1496.8
(3)
P 		638
B 1017.2
(-2.7)
P 		1203.7
(-0.8)
P 		983.9
(-3)
P 		1574
(3)
P 		1060
(-2.2)
P 		1548.1
(2.7)
P 		590
C 1041.9
(-1.9)
P 		1049.5
(-1.8)
P 		923.6
(-3)
P 		1428.5
(1.8)
P 		1226.7
(-0.1)
P 		1550
(3)
P 		626
avr 1081.7
(-1.4) 		1138.5
(-0.9) 		922.1
(-3) 		1321.1
(0.9) 		1203.3
(-0.2) 		1531.6
(3) 		610
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 314.5
(1.1)
P 		264.8
(-0.7)
P 		365.7
(3)
P 		200.6
(-3)
P 		165
B 419.9
(3)
P 		315.2
(-3)
P 		345.7
(-1.3)
P 		347.7
(-1.1)
P 		105
C 336.7
(-1)
P 		320.5
(-1.6)
P 		443.6
(3)
P 		281.3
(-3)
P 		162
avr 357
(1.5) 		300.2
(-1.7) 		385
(3) 		276.5
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 390
1 2 3 4 5 6 range
A 218.6
(-2.2)
P 		413.4
(3)
P 		187
(-3)
P 		243.7
(-1.5)
P 		399.3
(2.6)
P 		364.4
(1.7)
P 		226
B 353.9
(-1)
P 		400.7
(-0.1)
P 		238.9
(-3)
P 		416.9
(0.2)
P 		430.6
(0.4)
P 		577.3
(3)
P 		338
C 386.2
(0.2)
P 		320.2
(-1.2)
P 		235.1
(-3)
P 		287.3
(-1.9)
P 		397
(0.4)
P 		518.9
(3)
P 		284
avr 319.6
(-0.8) 		378.1
(0.6) 		220.3
(-3) 		316
(-0.8) 		409
(1.2) 		486.9
(3) 		267
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175066_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21412
Sequence Type Exemplar sequence
Representative Public ID AV188776 NCBI
Target Description AV188776 /REP_DB=TREMBL Accession /GB=AV188776 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk528d6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069950(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069950 NCBI Caenorhabditis elegans F19B6.1a (F19B6.1) mRNA, complete cds. 11/11 None
F19B6.1a ENSEMBL cdna:known chromosome:CEL140:IV:12329395:12334571:-1 gene:F19B6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178181 2 1 NM_069950 174010_at (11), 175066_at (11), 187426_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12330985-12331328(-) 100.0 100.0
Public Domain and Genome References
Ensembl F19B6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93462 Hypothetical protein F19B6.1b [Caenorhabditis elegans] ref|NP_502350.1| F19B6.1b [Caenorhabditis elegans] 0.0
blast CAA93459 Hypothetical protein F19B6.1a [Caenorhabditis elegans] ref|NP_502351.1| F19B6.1a [Caenorhabditis elegans] 0.0
blast CAE59842 Hypothetical protein CBG03314 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006083 EMBL-EBI Phosphoribulokinase/uridine kinase 5.4E-111
Sequence
Target Sequence 
>C. ELEGANS:175066_AT
ccgttcttcattttattgacttctcttcatgatttctggcattcagctcgataattcatt
tataccctgttctttctagtgttttttcgcgttgtttgtgacggttaaattcttccctct
acatctttgcgcgtttccacacaaaaatctgtacacgacattcggttttctcgttgttcc
atttcttttttgttcaacggagcgcgtttgtcgttgcaggaatcggttttaatatcatca
tccattcacgcattctctttttcatgttgttcattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTTCTTCATTTTATTGACTTCTC 221 265 22 Antisense
TTGACTTCTCTTCATGATTTCTGGC 609 705 37 Antisense
GATTTCTGGCATTCAGCTCGATAAT 27 429 52 Antisense
TATACCCTGTTCTTTCTAGTGTTTT 498 661 82 Antisense
CTAGTGTTTTTTCGCGTTGTTTGTG 112 223 97 Antisense
ATCTTTGCGCGTTTCCACACAAAAA 486 31 144 Antisense
GTACACGACATTCGGTTTTCTCGTT 686 459 172 Antisense
TGTTCCATTTCTTTTTTGTTCAACG 424 563 196 Antisense
GCGCGTTTGTCGTTGCAGGAATCGG 215 287 223 Antisense
TAATATCATCATCCATTCACGCATT 379 635 251 Antisense
ATTCTCTTTTTCATGTTGTTCATTG 304 11 273 Antisense
Sequence Source Affymetrix Proprietary Database