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[175065_s_at]

Description AV195431 /REP_DB=TREMBL Accession /GB=AV195431 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk641g2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 41      4grp_total > 17      6grp_highest_sub > 03_04      6grp_cgc > 60      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21983
1 2 3 4 range
A 29241.5
(-3)
P 		39888.6
(0.3)
P 		37568.1
(-0.4)
P 		48791.4
(3)
P 		19550
B 29536.3
(-3)
P 		32400.9
(-1.3)
P 		33006.2
(-0.9)
P 		39680.9
(3)
P 		10145
C 26808.2
(-3)
P 		30117.9
(-1.7)
P 		28828.9
(-2.2)
P 		42249.7
(3)
P 		15442
avr 28528.7
(-3) 		34135.8
(-0.8) 		33134.4
(-1.2) 		43574
(3) 		15045

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7958
1 2 3 4 5 6 range
A 29476.8
(3)
P 		24289.4
(-2.4)
P 		27711
(1.2)
P 		27729.8
(1.2)
P 		23670.8
(-3)
P 		25214.5
(-1.4)
P 		5806
B 24586.7
(1.4)
P 		25565.7
(2.8)
P 		25718.3
(3)
P 		24584.7
(1.4)
P 		21910
(-2.4)
P 		21519.2
(-3)
P 		4199
C 24686.1
(-0.3)
P 		26535.8
(1.5)
P 		27885.1
(2.8)
P 		28134.5
(3)
P 		26204.3
(1.1)
P 		21895.6
(-3)
P 		6239
avr 26249.9
(1.8) 		25463.6
(0.7) 		27104.8
(3) 		26816.3
(2.6) 		23928.4
(-1.5) 		22876.4
(-3) 		4228
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3523
1 2 3 4 range
A 10646.8
(3)
P 		8658.7
(-0.4)
P 		9821
(1.6)
P 		7142.1
(-3)
P 		3505
B 9418.9
(3)
P 		8002.3
(-1.8)
P 		7648.3
(-3)
P 		8456
(-0.3)
P 		1771
C 8874.3
(0.6)
P 		8659.1
(0.2)
P 		10047.8
(3)
P 		7124
(-3)
P 		2924
avr 9646.7
(3) 		8440
(-0.5) 		9172.4
(1.6) 		7574
(-3) 		2073

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3716
1 2 3 4 5 6 range
A 5433.8
(-3)
P 		8638.5
(3)
P 		6034.9
(-1.9)
P 		7032.9
(-0)
P 		7142.8
(0.2)
P 		6138.9
(-1.7)
P 		3205
B 8555
(2.2)
P 		8509.7
(2.1)
P 		6245.2
(-3)
P 		6511.6
(-2.4)
P 		8901.7
(3)
P 		8024.4
(1)
P 		2657
C 9150.1
(3)
P 		8096.9
(1.2)
P 		7097.2
(-0.5)
P 		5657.9
(-3)
P 		8479.3
(1.8)
P 		7329.7
(-0.1)
P 		3492
avr 7713
(0.9) 		8415
(3) 		6459.1
(-2.8) 		6400.8
(-3) 		8174.6
(2.3) 		7164.3
(-0.7) 		2014
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175065_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21405
Sequence Type Exemplar sequence
Representative Public ID AV195431 NCBI
Target Description AV195431 /REP_DB=TREMBL Accession /GB=AV195431 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk641g2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069929(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069929 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-34) (rpl-34) mRNA, complete cds. 11/11 None
SNAP00000027933 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12268973:12269432:1 11/11 None
GENEFINDER00000027947 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12268973:12269432:1 11/11 None
C42C1.14.3 ENSEMBL cdna:known chromosome:CEL140:IV:12268960:12269666:1 gene:C42C1.14 11/11 None
C42C1.14.2 ENSEMBL cdna:known chromosome:CEL140:IV:12268960:12269667:1 gene:C42C1.14 11/11 None
C42C1.14.1 ENSEMBL cdna:known chromosome:CEL140:IV:12268961:12269504:1 gene:C42C1.14 11/11 None
C42C1.14.5 ENSEMBL cdna:known chromosome:CEL140:IV:12268964:12269557:1 gene:C42C1.14 11/11 None
C42C1.14.4 ENSEMBL cdna:known chromosome:CEL140:IV:12268966:12269667:1 gene:C42C1.14 11/11 None
C42C1.14.6 ENSEMBL cdna:known chromosome:CEL140:IV:12268966:12269670:1 gene:C42C1.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12268980-12269414(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol rpl-34
Ensembl C42C1.14
Entrez Gene 178173 Entrez gene
SwissProt Q95X53 EMBL-EBI
WormBase CE26911 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260369_AT 60S ribosomal protein L34 (RPL34B) at
CANINE:1585714_S_AT similar to ribosomal protein L34 cfa
CANINE_2:CFA.12239.1.S1_AT similar to ribosomal protein L34 cfa
CANINE_2:CFA.12239.1.S1_S_AT similar to ribosomal protein L34 cfa
DROSOPHILA_2:1641721_A_AT Ribosomal protein L34a dm
CHICKEN:GGA.4539.2.S1_A_AT similar to ribosomal protein L34; 60S ribosomal protein L34 gga
PLASMODIUM_ANOPHELES:200026_AT ribosomal protein L34 hs
HG-U133_PLUS_2:200026_AT ribosomal protein L34 hs
HG-FOCUS:200026_AT ribosomal protein L34 hs
HG-U133A:200026_AT ribosomal protein L34 hs
HG-U133B:200026_AT ribosomal protein L34 hs
HG-U133A_2:200026_AT ribosomal protein L34 hs
U133_X3P:200026_AT ribosomal protein L34 hs
HU35KSUBC:RC_T78324_AT ribosomal protein L34 hs
HUGENEFL:L38941_AT ribosomal protein L34 hs
U133_X3P:G4506636_3P_X_AT ribosomal protein L34 hs
U133_X3P:G4506636_3P_S_AT ribosomal protein L34 hs
U133_X3P:G4506636_3P_AT ribosomal protein L34 hs
HG-U95AV2:33657_AT ribosomal protein L34 hs
HG-U95C:54386_S_AT ribosomal protein L34 hs
HG-U95E:88403_R_AT ribosomal protein L34 hs
MG-U74AV2:96309_R_AT RIKEN cDNA 1100001I22 gene mm
MU11KSUBA:AA541910_S_AT RIKEN cDNA 1100001I22 gene mm
MU11KSUBA:AA541910_R_AT RIKEN cDNA 1100001I22 gene mm
MG-U74AV2:96307_S_AT RIKEN cDNA 1100001I22 gene mm
MOE430A:1427875_A_AT RIKEN cDNA 1100001I22 gene mm
MOUSE430A_2:1427875_A_AT RIKEN cDNA 1100001I22 gene mm
MOUSE430_2:1427875_A_AT RIKEN cDNA 1100001I22 gene mm
MOE430A:1438655_A_AT RIKEN cDNA 1100001I22 gene mm
MOUSE430A_2:1438655_A_AT RIKEN cDNA 1100001I22 gene mm
MOUSE430_2:1438655_A_AT RIKEN cDNA 1100001I22 gene mm
MG-U74AV2:96308_R_AT RIKEN cDNA 1100001I22 gene mm
MU19KSUBB:TC32461_AT RIKEN cDNA 1100001I22 gene, mRNA (cDNA clone MGC:41239 IMAGE:1496108) mm
RG-U34B:RC_AI013910_AT ribosomal protein L34 (predicted) rn
RAE230A:1371761_AT ribosomal protein L34 (predicted) rn
RAT230_2:1371761_AT ribosomal protein L34 (predicted) rn
YEAST_2:1769877_AT Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl34Ap and has similarity to rat L34 ribosomal protein Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_502330 Ribosomal Protein, Large subunit family member (rpl-34) [Caenorhabditis elegans] gb|AAK72292.1| Ribosomal protein, large subunit protein 34 [Caenorhabditis elegans] emb|CAE62212.1| Hypothetical protein CBG06263 [Caenorhabditis briggsae] 7.0E-57
blast CAA16982 SPAC23A1.08c [Schizosaccharomyces pombe] ref|NP_594438.1| hypothetical protein SPAC23A1.08c [Schizosaccharomyces pombe 972h-] sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A 7.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR008195 EMBL-EBI Ribosomal protein L34e 1.9E-54
Sequence
Target Sequence 
>C. ELEGANS:175065_S_AT
tacctacagacgccgtttgtcgtacaacaccacctccaacaagaagcgtcttgtcaagac
cccaggaggacgtctcgttgtccaatacatcaagaagagaggacaaattccaaagtgcag
agacaccggagtcaagctccacggaatcaccccagctcgcccaatcgctctccgccttct
caagagaaacgagcgtaccgtcaccagagcctacggaggatgcctctcaccaaacgccgt
taaggagcgcattacccgtgcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCTACAGACGCCGTTTGTCGTAC 564 649 25 Antisense
GTCTTGTCAAGACCCCAGGAGGACG 110 469 72 Antisense
GACGTCTCGTTGTCCAATACATCAA 632 377 93 Antisense
GGACAAATTCCAAAGTGCAGAGACA 177 527 125 Antisense
TGCAGAGACACCGGAGTCAAGCTCC 174 579 140 Antisense
CGGAGTCAAGCTCCACGGAATCACC 154 243 151 Antisense
GCTCTCCGCCTTCTCAAGAGAAACG 645 299 191 Antisense
AAGAGAAACGAGCGTACCGTCACCA 228 151 206 Antisense
GTCACCAGAGCCTACGGAGGATGCC 681 465 224 Antisense
CCTCTCACCAAACGCCGTTAAGGAG 133 265 247 Antisense
TTAAGGAGCGCATTACCCGTGCTTT 621 677 264 Antisense
Sequence Source Affymetrix Proprietary Database