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[175063_s_at] lin-15a like protein

Description AU115870 /REP_DB=TREMBL Accession /GB=AU115870 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk737h1 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 74      6grp_total > 65      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 90.8
(-1.4)
P 		79.6
(-1.8)
A 		42.8
(-3)
A 		220.1
(3)
P 		177
B 89.1
(-1.2)
P 		83.5
(-1.4)
A 		36.5
(-3)
A 		215.6
(3)
P 		179
C 109.8
(-2.2)
P 		96.1
(-3)
A 		96.1
(-3)
P 		202.3
(3)
P 		106
avr 96.6
(-1.5) 		86.4
(-1.9) 		58.5
(-3) 		212.7
(3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 83.7
(-2.1)
P 		79
(-2.6)
P 		132.9
(3)
P 		124.6
(2.1)
P 		94.7
(-0.9)
P 		74.8
(-3)
P 		58
B 78.2
(-3)
P 		99.7
(-1.6)
P 		168.9
(3)
P 		106
(-1.2)
P 		117.8
(-0.4)
P 		142.1
(1.2)
P 		91
C 126.5
(-0.6)
P 		78.4
(-2.8)
P 		75.5
(-2.9)
P 		73.7
(-3)
A 		81.8
(-2.6)
P 		208.4
(3)
P 		135
avr 96.1
(-1.9) 		85.7
(-3) 		125.8
(1.3) 		101.4
(-1.3) 		98.1
(-1.7) 		141.8
(3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 33
(3)
P 		17.3
(-1.3)
A 		11.2
(-3)
A 		32.2
(2.8)
P 		22
B 28.4
(0.2)
P 		20.6
(-1.1)
A 		8.5
(-3)
A 		45.9
(3)
P 		37
C 36.4
(3)
P 		27.6
(-3)
A 		33.5
(1)
P 		34.1
(1.4)
P 		9
avr 32.6
(1.5) 		21.8
(-1.8) 		17.7
(-3) 		37.4
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 15.4
(-3)
P 		28.1
(1.7)
P 		28.9
(2)
P 		31.6
(3)
P 		28.6
(1.9)
P 		18.2
(-2)
P 		16
B 27.2
(-3)
P 		33.2
(-1.6)
P 		41
(0.2)
P 		28.1
(-2.8)
P 		47.9
(1.8)
P 		53
(3)
P 		26
C 46.9
(0.5)
P 		23.9
(-2)
P 		19.2
(-2.5)
P 		14.8
(-3)
A 		26.5
(-1.7)
P 		69.8
(3)
P 		55
avr 29.8
(-1.6) 		28.4
(-2) 		29.7
(-1.7) 		24.8
(-3) 		34.3
(-0.4) 		47
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175063_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21384
Sequence Type Exemplar sequence
Representative Public ID AU115870 NCBI
Target Description AU115870 /REP_DB=TREMBL Accession /GB=AU115870 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk737h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069596(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069596 NCBI Caenorhabditis elegans T25B9.8 (T25B9.8) mRNA, complete cds. 11/11 None
SNAP00000044116 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10766529:10768131:-1 11/11 None
GENEFINDER00000044123 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10766205:10768131:-1 11/11 None
T25B9.8 ENSEMBL cdna:known chromosome:CEL140:IV:10766529:10768283:-1 gene:T25B9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10766534-10766895(-) 100.0 100.0
Public Domain and Genome References
Gene Title lin-15a like protein
Ensembl T25B9.8
Entrez Gene 177969 Entrez gene
SwissProt Q22771 EMBL-EBI
WormBase CE32940 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94379 Hypothetical protein T25B9.8 [Caenorhabditis elegans] ref|NP_501997.2| T25B9.8 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175063_S_AT
gctcttcattttttgggagtcgtggatccagatattgatattcacacggataacgagaaa
attgtgcaagcttatcatgcagtaaaaggcatcaaggattcaagatttgtgcagaaacta
gtattcgagggtagcaggaagcatattgtgcccttctgcaatacattgaagaactttttc
caaaagtatgcgcggaaaaattatatccgacaagcaacacgcaaaattttgccgacagaa
atctacggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTTCATTTTTTGGGAGTCGTGG 75 299 13 Antisense
GGGAGTCGTGGATCCAGATATTGAT 604 495 27 Antisense
ATTGATATTCACACGGATAACGAGA 580 5 46 Antisense
GAGAAAATTGTGCAAGCTTATCATG 37 391 67 Antisense
GGCATCAAGGATTCAAGATTTGTGC 341 537 100 Antisense
GAAACTAGTATTCGAGGGTAGCAGG 424 347 126 Antisense
GGAAGCATATTGTGCCCTTCTGCAA 229 531 149 Antisense
TTGTGCCCTTCTGCAATACATTGAA 376 707 158 Antisense
GAACTTTTTCCAAAAGTATGCGCGG 173 349 183 Antisense
CCGACAAGCAACACGCAAAATTTTG 9 263 219 Antisense
AATTTTGCCGACAGAAATCTACGGT 351 173 237 Antisense
Sequence Source Affymetrix Proprietary Database