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[175062_at]

Description AV196253 /REP_DB=TREMBL Accession /GB=AV196253 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk651h9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 05      4grp_highest_8_8 > 58      4grp_high_8_8 > 26      6grp_highest_nonorm > 90      6grp_total > 05      4grp_total > 37      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 228.8
(3)
P 		139.6
(-1.9)
P 		119.3
(-3)
P 		155.1
(-1)
P 		110
B 173
(3)
P 		169.2
(2.6)
P 		111.7
(-3)
P 		134.8
(-0.7)
P 		61
C 190.4
(3)
P 		161.6
(0.5)
P 		122.4
(-3)
P 		134.3
(-2)
P 		68
avr 197.4
(3) 		156.8
(-0.1) 		117.8
(-3) 		141.4
(-1.2) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 233.8
(3)
P 		218.8
(2.4)
P 		117
(-2.1)
P 		95.1
(-3)
P 		128.1
(-1.6)
P 		120.9
(-1.9)
P 		139
B 201.9
(3)
P 		171.5
(1.6)
P 		122.7
(-0.7)
P 		90.6
(-2.2)
P 		109.4
(-1.3)
P 		73.8
(-3)
P 		128
C 340.7
(3)
P 		182.2
(-0.3)
P 		110.4
(-1.8)
P 		64.8
(-2.8)
P 		173.7
(-0.5)
P 		53.1
(-3)
P 		288
avr 258.8
(3) 		190.8
(0.7) 		116.7
(-1.8) 		83.5
(-3) 		137.1
(-1.1) 		82.6
(-3) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 83.3
(3)
P 		30.3
(-2.2)
P 		31.2
(-2.2)
P 		22.7
(-3)
P 		61
B 55.2
(3)
P 		41.8
(0.3)
P 		25.9
(-3)
P 		28.7
(-2.4)
P 		29
C 63
(3)
P 		46.5
(0.5)
P 		42.6
(-0)
P 		22.6
(-3)
P 		40
avr 67.2
(3) 		39.5
(-0.9) 		33.2
(-1.8) 		24.7
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 43.1
(-0.9)
P 		77.8
(3)
P 		25.5
(-2.8)
P 		24.1
(-3)
P 		38.6
(-1.4)
P 		29.4
(-2.4)
P 		54
B 70.3
(3)
P 		57.1
(1.3)
P 		29.8
(-2.2)
P 		24
(-3)
P 		44.5
(-0.3)
P 		27.5
(-2.5)
P 		46
C 126.3
(3)
P 		55.6
(-0.7)
P 		28.1
(-2.2)
P 		13
(-3)
P 		56.2
(-0.7)
P 		17.8
(-2.7)
P 		113
avr 79.9
(3) 		63.5
(1.3) 		27.8
(-2.3) 		20.4
(-3) 		46.4
(-0.4) 		24.9
(-2.5) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175062_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21587
Sequence Type Exemplar sequence
Representative Public ID AV196253 NCBI
Target Description AV196253 /REP_DB=TREMBL Accession /GB=AV196253 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk651h9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067928(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067928 NCBI Caenorhabditis elegans mammalian ELKS/CAST/ERC/Rab6 interacting protein homolog family member (elks-1) (elks-1) mRNA, complete cds. 11/11 A 
F42A6.9 ENSEMBL cdna:known chromosome:CEL140:IV:3342522:3350014:-1 gene:F42A6.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037848 4/11 Cross Hyb Matching Probes None
GENEFINDER00000037855 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3342586-3342872(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol elks-1
Ensembl F42A6.9
Entrez Gene 177102 Entrez gene
SwissProt O44490 EMBL-EBI
WormBase CE28392 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1596614_AT similar to cytomatrix protein p110 cfa
CANINE_2:CFAAFFX.12990.1.S1_S_AT similar to cytomatrix protein p110 cfa
HG-U95AV2:36842_AT CAZ-associated structural protein hs
HG-U133_PLUS_2:213938_AT CAZ-associated structural protein hs
HG-U133A_2:213938_AT CAZ-associated structural protein hs
HG-U133A:213938_AT CAZ-associated structural protein hs
HU35KSUBA:AB002376_AT CAZ-associated structural protein hs
U133_X3P:HS.7006.0.S1_3P_AT CAZ-associated structural protein hs
MG-U74BV2:116728_AT DNA segment, Chr 14, ERATO Doi 171, expressed mm
MOE430B:1434582_AT DNA segment, Chr 14, ERATO Doi 171, expressed mm
MOUSE430_2:1434582_AT DNA segment, Chr 14, ERATO Doi 171, expressed mm
MOE430B:1444681_AT DNA segment, Chr 14, ERATO Doi 171, expressed, mRNA (cDNA clone MGC:59433 IMAGE:6331997) mm
MOUSE430_2:1444681_AT DNA segment, Chr 14, ERATO Doi 171, expressed, mRNA (cDNA clone MGC:59433 IMAGE:6331997) mm
MG-U74BV2:104832_AT DNA segment, Chr 14, ERATO Doi 171, expressed, mRNA (cDNA clone MGC:59433 IMAGE:6331997) mm
MG-U74CV2:134829_AT DNA segment, Chr 14, ERATO Doi 171, expressed, mRNA (cDNA clone MGC:59433 IMAGE:6331997) mm
MG-U74CV2:136181_AT DNA segment, Chr 14, ERATO Doi 171, expressed, mRNA (cDNA clone MGC:59433 IMAGE:6331997) mm
MOE430B:1443705_AT DNA segment, Chr 14, ERATO Doi 171, expressed, mRNA (cDNA clone MGC:59433 IMAGE:6331997) mm
MOUSE430_2:1443705_AT DNA segment, Chr 14, ERATO Doi 171, expressed, mRNA (cDNA clone MGC:59433 IMAGE:6331997) mm
RAE230B:1392420_AT Cytomatrix protein p110 rn
RAT230_2:1392420_AT Cytomatrix protein p110 rn
RAE230B:1397158_AT Cytomatrix protein p110 rn
RAT230_2:1397158_AT Cytomatrix protein p110 rn
Protein Similarities
Method ID Description E-Value
blast AAB92054 Mammalian elks/cast/erc/rab6 interacting protein homolog protein 1 [Caenorhabditis elegans] ref|NP_500329.1| mammalian ELKS/CAST/ERC/Rab6 interacting protein homolog family member (elks-1) [Caenorhabditis elegans] 0.0
blast CAE73588 Hypothetical protein CBG21069 [Caenorhabditis briggsae] 0.0
blast CAE73587 Hypothetical protein CBG21068 [Caenorhabditis briggsae] 1.0E-147
Sequence
Target Sequence 
>C. ELEGANS:175062_AT
taccggctccagtgattcccggtaccattggcattccacaacactctcagcacccgccac
aggtagatcacgacgatgctgacggaatttgggcctgaaaattgtctagaattgtctgaa
cttttccgaaatttcccagttttttctcatatctgttcacttactttttttttgaaaaaa
atctcacatccaatggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCGGCTCCAGTGATTCCCGGTAC 508 379 29 Antisense
GTACCATTGGCATTCCACAACACTC 70 459 50 Antisense
CCCGCCACAGGTAGATCACGACGAT 69 259 81 Antisense
GGTAGATCACGACGATGCTGACGGA 449 505 90 Antisense
GATGCTGACGGAATTTGGGCCTGAA 23 415 103 Antisense
TTTGGGCCTGAAAATTGTCTAGAAT 6 665 116 Antisense
GTCTAGAATTGTCTGAACTTTTCCG 55 455 132 Antisense
TCTGAACTTTTCCGAAATTTCCCAG 257 605 143 Antisense
GTTTTTTCTCATATCTGTTCACTTA 482 449 167 Antisense
TATCTGTTCACTTACTTTTTTTTTG 303 659 178 Antisense
GAAAAAAATCTCACATCCAATGGCA 122 355 202 Antisense
Sequence Source Affymetrix Proprietary Database