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[175060_at]

Description AV179711 /REP_DB=TREMBL Accession /GB=AV179711 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk597a4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      6grp_highest_nonorm > 71      6grp_total > 10      4grp_total > 50      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 792
1 2 3 4 range
A 90.2
(-2.8)
P 		420.7
(1.8)
P 		503.4
(3)
P 		77.3
(-3)
A 		426
B 68.6
(-2.8)
A 		753
(3)
P 		515.2
(1)
P 		48.8
(-3)
A 		704
C 65.1
(-3)
A 		840.3
(3)
P 		657
(1.6)
P 		89.1
(-2.8)
A 		775
avr 74.6
(-3) 		671.3
(3) 		558.5
(1.9) 		71.7
(-3) 		600

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 491
1 2 3 4 5 6 range
A 189.7
(-3)
P 		633.1
(3)
P 		460.9
(0.7)
P 		327.4
(-1.1)
P 		340.1
(-1)
P 		262.7
(-2)
P 		443
B 142.4
(-3)
P 		543.1
(3)
P 		285.5
(-0.9)
P 		438.8
(1.4)
P 		331.1
(-0.2)
P 		407.1
(1)
P 		401
C 177.9
(-3)
P 		502.6
(3)
P 		340.2
(-0)
P 		390.2
(0.9)
P 		274.6
(-1.2)
P 		241.2
(-1.8)
P 		325
avr 170
(-3) 		559.6
(3) 		362.2
(-0) 		385.5
(0.3) 		315.3
(-0.8) 		303.7
(-0.9) 		390
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 32.8
(-1.9)
P 		91.3
(1)
P 		131.6
(3)
P 		11.3
(-3)
A 		120
B 21.9
(-2.6)
A 		186
(3)
P 		119.4
(0.7)
P 		10.4
(-3)
A 		176
C 21.5
(-2.8)
A 		241.6
(3)
P 		229
(2.7)
P 		15
(-3)
A 		227
avr 25.4
(-2.5) 		173
(3) 		160
(2.5) 		12.2
(-3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 35
(-3)
P 		225.2
(3)
P 		100.4
(-0.9)
P 		83
(-1.5)
P 		102.6
(-0.9)
P 		64
(-2.1)
P 		190
B 49.5
(-3)
P 		180.8
(3)
P 		69.3
(-2.1)
P 		116.2
(0)
P 		134.5
(0.9)
P 		151.8
(1.7)
P 		131
C 66
(-3)
P 		153.4
(3)
P 		86.6
(-1.6)
P 		78.5
(-2.1)
P 		88.9
(-1.4)
P 		80.7
(-2)
P 		87
avr 50.2
(-3) 		186.5
(3) 		85.4
(-1.5) 		92.6
(-1.1) 		108.7
(-0.4) 		98.8
(-0.9) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175060_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21981
Sequence Type Exemplar sequence
Representative Public ID AV179711 NCBI
Target Description AV179711 /REP_DB=TREMBL Accession /GB=AV179711 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk597a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071042(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071042 NCBI Caenorhabditis elegans F52F10.2 (F52F10.2) mRNA, complete cds. 11/11 A 
F52F10.2 ENSEMBL cdna:known chromosome:CEL140:V:1547972:1550530:1 gene:F52F10.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019925 6/11 Cross Hyb Matching Probes None
SNAP00000019920 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1550125-1550453(+) 92.14 100.0
Public Domain and Genome References
Gene Title
Ensembl F52F10.2
Entrez Gene 178644 Entrez gene
SwissProt Q9UAR0 EMBL-EBI
WormBase CE29388 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69232 Hypothetical protein F52F10.2 [Caenorhabditis elegans] ref|NP_503443.1| F52F10.2 [Caenorhabditis elegans] 0.0
blast CAE62487 Hypothetical protein CBG06591 [Caenorhabditis briggsae] 0.0
blast CAA91359 Hypothetical protein W03C9.6 [Caenorhabditis elegans] ref|NP_496546.2| W03C9.6 [Caenorhabditis elegans] 1.0E-114
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503443.1 12 53-75,90-112,125-147,151-173,186-208,228-250,286-308,328-347,360-379,413-435,455-477,482-501
F52F10.2 12 53-75,90-112,125-147,151-173,186-208,228-250,286-308,328-347,360-379,413-435,455-477,482-501
Sequence
Target Sequence 
>C. ELEGANS:175060_AT
tcttggtctgcaacctctttggataatgaatggatgcataatgtcttgtgtggttggctt
gtggatcgttatgcttcagaagttcaaggattactcgtagaaacttggataaatcaacga
acaacgggttatcaacactcgcatatctttgtatgaactgtatttattatcaaaaacatt
ggggattttaacaccaatatactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGGTCTGCAACCTCTTTGGATA 10 619 33 Antisense
GCAACCTCTTTGGATAATGAATGGA 114 321 42 Antisense
GATGCATAATGTCTTGTGTGGTTGG 583 413 65 Antisense
GTCTTGTGTGGTTGGCTTGTGGATC 107 469 75 Antisense
TTGGCTTGTGGATCGTTATGCTTCA 89 709 86 Antisense
GTGGATCGTTATGCTTCAGAAGTTC 42 491 93 Antisense
GGATTACTCGTAGAAACTTGGATAA 49 507 120 Antisense
GAACAACGGGTTATCAACACTCGCA 471 351 151 Antisense
GGTTATCAACACTCGCATATCTTTG 59 507 159 Antisense
CACTCGCATATCTTTGTATGAACTG 38 199 168 Antisense
GGGGATTTTAACACCAATATACTGA 403 497 213 Antisense
Sequence Source Affymetrix Proprietary Database