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[175059_at]

Description AV202050 /REP_DB=TREMBL Accession /GB=AV202050 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk545a3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 06      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 80      6grp_total > 07      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 214
1 2 3 4 range
A 330.6
(3)
P 		164
(-2)
P 		130.3
(-3)
P 		191.7
(-1.2)
P 		200
B 277
(3)
P 		175.7
(-1.1)
P 		140.4
(-2.5)
P 		128.9
(-3)
P 		148
C 295.5
(3)
P 		185.6
(-0.7)
P 		116.9
(-3)
P 		178.1
(-0.9)
P 		179
avr 301
(3) 		175.1
(-1.4) 		129.2
(-3) 		166.2
(-1.7) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 417.1
(3)
P 		253.5
(-0.3)
P 		207.1
(-1.3)
P 		176.2
(-1.9)
P 		122.5
(-3)
P 		131
(-2.8)
P 		295
B 379.6
(3)
P 		225.8
(-0.3)
P 		183.2
(-1.2)
P 		187.8
(-1.1)
P 		162.3
(-1.7)
P 		100.6
(-3)
P 		279
C 442.3
(3)
P 		231.8
(-0.6)
P 		199.4
(-1.2)
P 		155.4
(-1.9)
P 		179.3
(-1.5)
P 		92.2
(-3)
P 		350
avr 413
(3) 		237
(-0.5) 		196.6
(-1.3) 		173.1
(-1.7) 		154.7
(-2.1) 		107.9
(-3) 		305
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 120.4
(3)
P 		35.6
(-2.5)
P 		34.1
(-2.6)
P 		28.1
(-3)
P 		92
B 88.3
(3)
P 		43.4
(-1.4)
P 		32.5
(-2.5)
P 		27.5
(-3)
P 		61
C 97.8
(3)
P 		53.4
(-0.9)
P 		40.8
(-2)
P 		30
(-3)
P 		68
avr 102.2
(3) 		44.1
(-1.7) 		35.8
(-2.4) 		28.5
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 76.9
(1.6)
P 		90.2
(3)
P 		45.1
(-1.6)
P 		44.7
(-1.7)
P 		37
(-2.5)
P 		31.9
(-3)
P 		58
B 132.1
(3)
P 		75.2
(-0.6)
P 		44.5
(-2.6)
P 		49.7
(-2.2)
P 		65.9
(-1.2)
P 		37.5
(-3)
P 		95
C 163.9
(3)
P 		70.7
(-1.2)
P 		50.8
(-2.1)
P 		31.3
(-3)
P 		58
(-1.8)
P 		30.9
(-3)
P 		133
avr 124.3
(3) 		78.7
(-0) 		46.8
(-2.1) 		41.9
(-2.4) 		53.6
(-1.7) 		33.4
(-3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175059_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21569
Sequence Type Exemplar sequence
Representative Public ID AV202050 NCBI
Target Description AV202050 /REP_DB=TREMBL Accession /GB=AV202050 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk545a3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068081(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068081 NCBI Caenorhabditis elegans C35B1.7 (C35B1.7) mRNA, complete cds. 11/11 None
C35B1.7 ENSEMBL cdna:known chromosome:CEL140:IV:4109058:4110465:1 gene:C35B1.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4109153-4110393(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35B1.7
Entrez Gene 177172 Entrez gene
SwissProt Q95X48 EMBL-EBI
WormBase CE27825 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68223 Hypothetical protein C35B1.7 [Caenorhabditis elegans] ref|NP_500482.1| C35B1.7 [Caenorhabditis elegans] 3.0E-32
blast CAE73888 Hypothetical protein CBG21486 [Caenorhabditis briggsae] 9.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500482.1 1 4-21
C35B1.7 1 4-21
Sequence
Target Sequence 
>C. ELEGANS:175059_AT
aacggagaccaatgaatcgcaacagttattatgagttcttgatgcgcgcccagcacggct
ccgcatccaaggacccgatcgtctcgtcccgctcgccaaaaatggaccgtaactgcttct
tttctcctgtacaatgcatgttcgacacgtcatcggcagacgctttggattcttttcgtc
gttaatctagtcacacgcccacctacaaaaaaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGAGACCAATGAATCGCAACAG 550 143 26 Antisense
TATTATGAGTTCTTGATGCGCGCCC 467 663 52 Antisense
TCGTCCCGCTCGCCAAAAATGGACC 259 605 109 Antisense
CAAAAATGGACCGTAACTGCTTCTT 148 191 122 Antisense
TGCTTCTTTTCTCCTGTACAATGCA 12 581 139 Antisense
CTGTACAATGCATGTTCGACACGTC 676 235 152 Antisense
GTTCGACACGTCATCGGCAGACGCT 21 443 165 Antisense
CGGCAGACGCTTTGGATTCTTTTCG 88 243 179 Antisense
ATTCTTTTCGTCGTTAATCTAGTCA 210 9 194 Antisense
CGTCGTTAATCTAGTCACACGCCCA 382 245 202 Antisense
TCACACGCCCACCTACAAAAAAGGC 107 629 216 Antisense
Sequence Source Affymetrix Proprietary Database