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[175058_at] GTP-binding protein

Description AV201910 /REP_DB=TREMBL Accession /GB=AV201910 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk543b9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 82      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 37      6grp_total > 80      4grp_total > 24      6grp_highest_sub > 04      6grp_cgc > 85      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3496
1 2 3 4 range
A 5752.2
(-2.1)
P 		5249.9
(-3)
P 		7882.8
(1.9)
P 		8482.7
(3)
P 		3233
B 5171
(-3)
P 		6470.7
(-0.8)
P 		6375.4
(-0.9)
P 		8667
(3)
P 		3496
C 5180.9
(-3)
P 		6473.3
(-0.3)
P 		6935.9
(0.6)
P 		8094.8
(3)
P 		2914
avr 5368
(-3) 		6064.6
(-1.6) 		7064.7
(0.3) 		8414.8
(3) 		3047

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3055
1 2 3 4 5 6 range
A 5225.8
(-1.8)
P 		4941.4
(-2.7)
P 		5142.6
(-2.1)
P 		6865.4
(3)
P 		5386.7
(-1.4)
P 		4834.9
(-3)
P 		2031
B 5480.4
(1)
P 		4090.8
(-3)
P 		4726.8
(-1.2)
P 		6195.7
(3)
P 		5658.2
(1.5)
P 		4359.2
(-2.2)
P 		2105
C 5489.5
(2.1)
P 		3810.1
(-3)
P 		5778.4
(3)
P 		4613.6
(-0.6)
P 		5377.1
(1.8)
P 		4556.5
(-0.7)
P 		1968
avr 5398.6
(1.2) 		4280.8
(-3) 		5215.9
(0.5) 		5891.6
(3) 		5474
(1.4) 		4583.5
(-1.9) 		1611
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1278
1 2 3 4 range
A 2094.4
(3)
P 		1139.6
(-3)
P 		2060.7
(2.8)
P 		1241.7
(-2.4)
P 		955
B 1649
(-0.2)
P 		1598.1
(-1)
P 		1477.3
(-3)
P 		1846.9
(3)
P 		370
C 1715
(-1)
P 		1861.1
(-0.2)
P 		2417.4
(3)
P 		1364.9
(-3)
P 		1053
avr 1819.5
(1) 		1532.9
(-2.4) 		1985.1
(3) 		1484.5
(-3) 		501

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1371
1 2 3 4 5 6 range
A 963.3
(-3)
P 		1757.4
(3)
P 		1120
(-1.8)
P 		1741.2
(2.9)
P 		1625.5
(2)
P 		1177.1
(-1.4)
P 		794
B 1906.9
(1)
P 		1361.6
(-1.9)
P 		1147.8
(-3)
P 		1641
(-0.4)
P 		2298.8
(3)
P 		1625.5
(-0.5)
P 		1151
C 2034.7
(3)
P 		1162.6
(-1.7)
P 		1470.7
(-0.1)
P 		927.8
(-3)
P 		1740
(1.4)
P 		1525.3
(0.2)
P 		1107
avr 1635
(0.6) 		1427.2
(-1.3) 		1246.2
(-3) 		1436.7
(-1.2) 		1888.1
(3) 		1442.6
(-1.2) 		642
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175058_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21329
Sequence Type Exemplar sequence
Representative Public ID AV201910 NCBI
Target Description AV201910 /REP_DB=TREMBL Accession /GB=AV201910 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk543b9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068935 NCBI Caenorhabditis elegans ADP-Ribosylation Factor related family member (arf-3) (arf-3) mRNA, complete cds. 11/11 None
F57H12.1 ENSEMBL cdna:known chromosome:CEL140:IV:7982509:7983913:1 gene:F57H12.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7983476-7983839(+) 100.0 100.0
Public Domain and Genome References
Gene Title GTP-binding protein
Gene Symbol arf-3
Ensembl F57H12.1
Entrez Gene 177595 Entrez gene
SwissProt O45099 EMBL-EBI
WormBase CE17122 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265187_AT ADP-ribosylation factor at
ATGENOME1:13069_AT ADP-ribosylation factor at
CANINE:1604196_AT similar to ADP-ribosylation factor 4 cfa
CANINE_2:CFA.18724.1.S1_S_AT similar to ADP-ribosylation factor 4 cfa
DROSOPHILA_2:1624693_AT ADP ribosylation factor 102F dm
DROSGENOME1:143715_AT ADP ribosylation factor 102F dm
HG-U95AV2:36585_AT ADP-ribosylation factor 4 hs
HG-U133_PLUS_2:201096_S_AT ADP-ribosylation factor 4 hs
HG-U133A_2:201096_S_AT ADP-ribosylation factor 4 hs
HG-U133A:201096_S_AT ADP-ribosylation factor 4 hs
HG-U133_PLUS_2:201097_S_AT ADP-ribosylation factor 4 hs
HG-U133A:201097_S_AT ADP-ribosylation factor 4 hs
HG-FOCUS:201097_S_AT ADP-ribosylation factor 4 hs
HG-U133A_2:201097_S_AT ADP-ribosylation factor 4 hs
HUGENEFL:M36341_AT ADP-ribosylation factor 4 hs
U133_X3P:G6995998_3P_A_AT ADP-ribosylation factor 4 hs
U133_X3P:HS.75290.0.S1_3P_A_AT ADP-ribosylation factor 4 hs
HG-U95C:53358_AT ADP-ribosylation factor 4 hs
HG-U95C:61605_AT ADP-ribosylation factor 4 hs
MOE430A:1423053_AT ADP-ribosylation factor 4 mm
MOUSE430_2:1423053_AT ADP-ribosylation factor 4 mm
MOUSE430A_2:1423053_AT ADP-ribosylation factor 4 mm
MOUSE430_2:1423052_AT ADP-ribosylation factor 4 mm
MOE430A:1423052_AT ADP-ribosylation factor 4 mm
MOUSE430A_2:1423052_AT ADP-ribosylation factor 4 mm
MOUSE430A_2:1439367_X_AT ADP-ribosylation factor 4 mm
MOE430A:1439367_X_AT ADP-ribosylation factor 4 mm
MOUSE430_2:1439367_X_AT ADP-ribosylation factor 4 mm
MU11KSUBA:D87901_S_AT ADP-ribosylation factor 4 mm
MG-U74AV2:160082_S_AT ADP-ribosylation factor 4 mm
MG-U74BV2:164060_AT ADP-ribosylation factor 4 mm
MOE430A:1434074_X_AT ADP-ribosylation factor 4 mm
MOUSE430A_2:1434074_X_AT ADP-ribosylation factor 4 mm
MOUSE430_2:1434074_X_AT ADP-ribosylation factor 4 mm
MOE430B:1457348_AT ADP-ribosylation factor 4 (Arf4), mRNA mm
MOUSE430_2:1457348_AT ADP-ribosylation factor 4 (Arf4), mRNA mm
MU19KSUBC:TC38999_AT ADP-ribosylation factor 4 (Arf4), mRNA mm
MU19KSUBC:TC38999_G_AT ADP-ribosylation factor 4 (Arf4), mRNA mm
MU19KSUBC:TC39000_AT ADP-ribosylation factor 4 (Arf4), mRNA mm
MU19KSUBC:TC39000_G_AT ADP-ribosylation factor 4 (Arf4), mRNA mm
RG-U34A:L12383_AT ADP-ribosylation factor 4 rn
RG-U34B:RC_AI028850_F_AT ADP-ribosylation factor 4 rn
RAE230A:1398758_AT ADP-ribosylation factor 4 rn
RAT230_2:1398758_AT ADP-ribosylation factor 4 rn
RAE230B:1381498_AT ADP-ribosylation factor 4 rn
RAT230_2:1381498_AT ADP-ribosylation factor 4 rn
RG-U34B:RC_AA956116_AT ADP-ribosylation factor 4 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC02598 Adp-ribosylation factor related protein 3 [Caenorhabditis elegans] ref|NP_501336.1| ADP-Ribosylation Factor related family member (arf-3) [Caenorhabditis elegans] gb|AAR89636.1| ADP-ribosylation factor related (20.5 kD) (arf-3) [Caenorhabditis elegans] 1.0E-100
blast CAE70927 Hypothetical protein CBG17727 [Caenorhabditis briggsae] 2.0E-99
blast AAH91641 MGC69501 protein [Xenopus tropicalis] ref|NP_001025648.1| MGC69501 protein [Xenopus tropicalis] 4.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175058_AT
ttcccttctcctccaaaatgtgtaaatccctttcccccattaaaatattcttaaccaaca
gccacaataatccacgcagccgttttaattttgttaaatagaatttgattgtttgatggc
actgggagcttctattttctgtgtgttattggtacccatctctctctctctctccgtccc
cccaacttcaaatcggcccgagccctgtcctaatttatgtgatatttggccgtctttttt
ggtcaaactctccgaaaccaccactgtgaactagtcggagagcaatcgatggctggtcca
cttcatcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCTTCTCCTCCAAAATGTGTAA 329 697 22 Antisense
TAACCAACAGCCACAATAATCCACG 103 639 73 Antisense
ATAATCCACGCAGCCGTTTTAATTT 626 23 88 Antisense
GTTTGATGGCACTGGGAGCTTCTAT 699 449 132 Antisense
GGAGCTTCTATTTTCTGTGTGTTAT 434 521 146 Antisense
TGTGTGTTATTGGTACCCATCTCTC 283 555 161 Antisense
CGAGCCCTGTCCTAATTTATGTGAT 707 249 220 Antisense
GATATTTGGCCGTCTTTTTTGGTCA 332 427 242 Antisense
TTGGTCAAACTCTCCGAAACCACCA 410 689 260 Antisense
GAAACCACCACTGTGAACTAGTCGG 54 359 275 Antisense
TCGATGGCTGGTCCACTTCATCGCA 321 603 307 Antisense
Sequence Source Affymetrix Proprietary Database