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[175057_at]

Description AU110597 /REP_DB=TREMBL Accession /GB=AU110597 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk720b9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 82      6grp_total > 93      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 971
1 2 3 4 range
A 293
(-2.5)
P 		313.7
(-2.3)
P 		244.2
(-3)
P 		803.4
(3)
P 		559
B 232.6
(-3)
P 		353.3
(-1.6)
P 		389.9
(-1.1)
P 		732.9
(3)
P 		500
C 274.5
(-3)
P 		475.1
(-1.7)
P 		319.3
(-2.7)
P 		1203.9
(3)
P 		929
avr 266.7
(-3) 		380.7
(-1.9) 		317.8
(-2.5) 		913.4
(3) 		647

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 475
1 2 3 4 5 6 range
A 411.1
(-0.1)
P 		239.6
(-3)
P 		349.8
(-1.1)
P 		314
(-1.7)
P 		596
(3)
P 		435.3
(0.3)
P 		356
B 400.1
(0.1)
P 		270
(-1.5)
P 		152.3
(-3)
P 		428
(0.5)
P 		626.8
(3)
P 		465
(1)
P 		475
C 410.4
(1.6)
P 		423.4
(2)
P 		296.5
(-1.6)
P 		259.5
(-2.7)
P 		458.1
(3)
P 		247.8
(-3)
P 		210
avr 407.2
(-0.1) 		311
(-2.1) 		266.2
(-3) 		333.8
(-1.6) 		560.3
(3) 		382.7
(-0.6) 		294
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 106.7
(1.8)
P 		68.1
(-2.5)
P 		63.8
(-3)
P 		117.6
(3)
P 		54
B 74.2
(-3)
P 		87.2
(-2)
P 		90.3
(-1.8)
P 		156.2
(3)
P 		82
C 90.9
(-3)
P 		136.6
(-0.6)
P 		111.3
(-1.9)
P 		203
(3)
P 		112
avr 90.6
(-2.8) 		97.3
(-2.3) 		88.5
(-3) 		158.9
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 75.8
(-3)
P 		85.2
(-2.5)
P 		76.2
(-3)
P 		79.6
(-2.8)
P 		179.8
(3)
P 		106
(-1.3)
P 		104
B 139.2
(-0.2)
P 		89.9
(-1.5)
P 		37
(-3)
P 		113.4
(-0.9)
P 		254.7
(3)
P 		173.4
(0.8)
P 		218
C 152.1
(3)
P 		129.2
(1.6)
P 		75.5
(-1.6)
P 		52.2
(-3)
P 		148.2
(2.8)
P 		83
(-1.2)
P 		100
avr 122.4
(-0.3) 		101.4
(-1.2) 		62.9
(-3) 		81.7
(-2.1) 		194.2
(3) 		120.8
(-0.4) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175057_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21831
Sequence Type Exemplar sequence
Representative Public ID AU110597 NCBI
Target Description AU110597 /REP_DB=TREMBL Accession /GB=AU110597 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk720b9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073785(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073785 NCBI Caenorhabditis elegans C15C8.7 (C15C8.7) mRNA, complete cds. 11/11 None
C15C8.7 ENSEMBL cdna:known chromosome:CEL140:V:12746750:12747640:-1 gene:C15C8.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030243 3/11 Cross Hyb Matching Probes None
GENEFINDER00000030252 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12746824-12747104(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15C8.7
Entrez Gene 179744 Entrez gene
SwissProt Q9GQ61 EMBL-EBI
WormBase CE27580 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42258 Hypothetical protein C15C8.7 [Caenorhabditis elegans] ref|NP_506186.1| C15C8.7 [Caenorhabditis elegans] gb|AAG41148.1| 5N224 [Caenorhabditis elegans] 2.0E-35
blast CAE63984 Hypothetical protein CBG08576 [Caenorhabditis briggsae] 2.0E-30
Sequence
Target Sequence 
>C. ELEGANS:175057_AT
aagtgtgtctaaagtgccttgctggtgagagtggccacatcacacatgttctctccagtc
tctcgaattgagagctcaaaaattcaatctgtatcattttattactttttcacttttctt
ttctttgctaagtgttaatttatctatgttgtttttatctctttcccaaagagcattatc
ttgttgttttcattttccatcttaattggcaaaccatttgtacatatgtacttgtatttc
aaatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGTGTCTAAAGTGCCTTGCTGG 125 159 17 Antisense
GTGCCTTGCTGGTGAGAGTGGCCAC 614 477 30 Antisense
TGAGAGTGGCCACATCACACATGTT 324 567 42 Antisense
TTCTCTCCAGTCTCTCGAATTGAGA 421 691 65 Antisense
ATCTGTATCATTTTATTACTTTTTC 623 33 103 Antisense
TCACTTTTCTTTTCTTTGCTAAGTG 181 627 126 Antisense
TCTATGTTGTTTTTATCTCTTTCCC 463 615 159 Antisense
TCTTTCCCAAAGAGCATTATCTTGT 194 615 176 Antisense
ATCTTGTTGTTTTCATTTTCCATCT 395 31 194 Antisense
TTTTCCATCTTAATTGGCAAACCAT 333 677 209 Antisense
ACATATGTACTTGTATTTCAAATCC 102 105 238 Antisense
Sequence Source Affymetrix Proprietary Database