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[175056_at] peptidase

Description CEK104EZR_rc /REP_DB=TREMBL Accession /GB=D72540 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk104e12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 46      6grp_total > 29      4grp_total > 60      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3895
1 2 3 4 range
A 5016.7
(2)
P 		4107.2
(0.6)
P 		5635.1
(3)
P 		1883.1
(-3)
P 		3752
B 4307.1
(1.2)
P 		4317.9
(1.2)
P 		5406.3
(3)
P 		1739.9
(-3)
P 		3666
C 3768.2
(0.1)
P 		4908.8
(2.5)
P 		5139.5
(3)
P 		2297.3
(-3)
P 		2842
avr 4364
(1.2) 		4444.6
(1.3) 		5393.6
(3) 		1973.4
(-3) 		3420

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1552
1 2 3 4 5 6 range
A 3523.9
(3)
P 		2863.3
(0)
P 		2201.4
(-3)
P 		2213
(-2.9)
P 		3480.9
(2.8)
P 		2697.8
(-0.7)
P 		1323
B 2758.9
(0)
P 		3474.4
(3)
P 		2027.3
(-3)
P 		2908.6
(0.7)
P 		2886.4
(0.6)
P 		2611
(-0.6)
P 		1447
C 2855.7
(-0.1)
P 		3578.9
(3)
P 		2479.6
(-1.7)
P 		2171
(-3)
P 		2558.5
(-1.3)
P 		2580.5
(-1.3)
P 		1408
avr 3046.2
(1.5) 		3305.5
(3) 		2236.1
(-3) 		2430.9
(-1.9) 		2975.3
(1.1) 		2629.8
(-0.8) 		1069
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1551
1 2 3 4 range
A 1826.6
(3)
P 		891.6
(-0.6)
P 		1473.1
(1.6)
P 		275.6
(-3)
P 		1551
B 1373.5
(3)
P 		1066.4
(1.2)
P 		1252.8
(2.3)
P 		370.8
(-3)
P 		1003
C 1247.4
(0.7)
P 		1411.3
(1.4)
P 		1791.3
(3)
P 		387.4
(-3)
P 		1404
avr 1482.5
(2.9) 		1123.1
(1) 		1505.7
(3) 		344.6
(-3) 		1161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 736
1 2 3 4 5 6 range
A 649.6
(-1.2)
P 		1018.3
(2.7)
P 		479.4
(-3)
P 		561.3
(-2.1)
P 		1050.4
(3)
P 		656.8
(-1.1)
P 		571
B 960
(1.1)
P 		1156.5
(2.9)
P 		492.3
(-3)
P 		770.4
(-0.5)
P 		1172.7
(3)
P 		973.6
(1.2)
P 		680
C 1058.5
(2.7)
P 		1092
(3)
P 		631.1
(-1.2)
P 		436.6
(-3)
P 		827.9
(0.6)
P 		863.9
(0.9)
P 		655
avr 889.4
(0.8) 		1088.9
(3) 		534.3
(-3) 		589.4
(-2.4) 		1017
(2.2) 		831.4
(0.2) 		555
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175056_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21539
Sequence Type Exemplar sequence
Representative Public ID CEK104EZR NCBI
Target Description CEK104EZR_rc /REP_DB=TREMBL Accession /GB=D72540 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk104e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067910(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067910 NCBI Caenorhabditis elegans W08E12.7 (peptidase) mRNA, complete cds. 11/11 None
W08E12.7.3 ENSEMBL cdna:known chromosome:CEL140:IV:3295129:3297020:1 gene:W08E12.7 11/11 None
W08E12.7.1 ENSEMBL cdna:known chromosome:CEL140:IV:3295131:3297027:1 gene:W08E12.7 11/11 None
W08E12.7.2 ENSEMBL cdna:known chromosome:CEL140:IV:3295135:3297027:1 gene:W08E12.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F47H4.3 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3296673-3297005(+) 100.0 100.0
Public Domain and Genome References
Gene Title peptidase
Ensembl W08E12.7
Entrez Gene 177097 Entrez gene
SwissProt Q9N5B3 EMBL-EBI
WormBase CE21275 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15694_S_AT metallopeptidase M24 family protein at
ATH1-121501:246307_AT metallopeptidase M24 family protein at
CANINE:1605714_AT similar to Proliferation-associated protein 2G4 (Cell cycle protein p38-2G4 homolog) (hG4-1) cfa
CANINE_2:CFA.20256.1.S1_S_AT similar to Proliferation-associated protein 2G4 (Cell cycle protein p38-2G4 homolog) (hG4-1) cfa
CANINE_2:CFAAFFX.1122.1.S1_AT similar to Proliferation-associated protein 2G4 (Cell cycle protein p38-2G4 homolog) (hG4-1) cfa
DROSOPHILA_2:1624981_A_AT dm
DROSGENOME1:154529_AT dm
CHICKEN:GGAAFFX.26679.1.S1_AT similar to proliferation-associated protein 1 gga
HG-U133_PLUS_2:208676_S_AT proliferation-associated 2G4, 38kDa hs
HG-U133A_2:208676_S_AT proliferation-associated 2G4, 38kDa hs
HG-U133A:208676_S_AT proliferation-associated 2G4, 38kDa hs
HU35KSUBA:W28391_AT proliferation-associated 2G4, 38kDa hs
HG-U133_PLUS_2:214794_AT proliferation-associated 2G4, 38kDa hs
HG-U133A_2:214794_AT proliferation-associated 2G4, 38kDa hs
HG-U133A:214794_AT proliferation-associated 2G4, 38kDa hs
U133_X3P:G4099505_3P_A_AT proliferation-associated 2G4, 38kDa hs
U133_X3P:HS.5181.2.S1_3P_X_AT proliferation-associated 2G4, 38kDa hs
U133_X3P:HS.5181.2.S1_3P_AT proliferation-associated 2G4, 38kDa hs
U133_X3P:HS.287770.0.S1_3P_X_AT proliferation-associated 2G4, 38kDa hs
U133_X3P:HS.287770.0.S1_3P_AT proliferation-associated 2G4, 38kDa hs
HG-U133A_2:216422_AT proliferation-associated 2G4, 38kDa hs
HG-U133_PLUS_2:216422_AT proliferation-associated 2G4, 38kDa hs
HG-U133A:216422_AT proliferation-associated 2G4, 38kDa hs
HG-U95AV2:41600_AT proliferation-associated 2G4, 38kDa hs
HG-U95E:80456_S_AT proliferation-associated 2G4, 38kDa hs
MOUSE430A_2:1423060_AT proliferation-associated 2G4 mm
MOUSE430_2:1423060_AT proliferation-associated 2G4 mm
MOE430A:1423060_AT proliferation-associated 2G4 mm
MOUSE430A_2:1450854_AT proliferation-associated 2G4 mm
MOE430A:1450854_AT proliferation-associated 2G4 mm
MOUSE430_2:1450854_AT proliferation-associated 2G4 mm
MU11KSUBA:AA672939_RC_S_AT proliferation-associated 2G4 mm
MU11KSUBB:MSA.1837.0_F_AT proliferation-associated 2G4 mm
MU11KSUBB:X84789_F_AT proliferation-associated 2G4 mm
MG-U74AV2:100125_AT proliferation-associated 2G4 mm
MG-U74AV2:162127_R_AT proliferation-associated 2G4 mm
MOE430A:1435372_A_AT proliferation-associated 2G4 mm
MOUSE430A_2:1435372_A_AT proliferation-associated 2G4 mm
MOUSE430_2:1435372_A_AT proliferation-associated 2G4 mm
MOE430A:1420142_S_AT proliferation-associated 2G4 mm
MOUSE430A_2:1420142_S_AT proliferation-associated 2G4 mm
MOUSE430_2:1420142_S_AT proliferation-associated 2G4 mm
MOE430A:1460265_AT Proliferation-associated 2G4 (Pa2g4), mRNA mm
MOUSE430A_2:1460265_AT Proliferation-associated 2G4 (Pa2g4), mRNA mm
MOUSE430_2:1460265_AT Proliferation-associated 2G4 (Pa2g4), mRNA mm
MU19KSUBA:TC23281_AT Proliferation-associated 2G4 (Pa2g4), mRNA mm
MU19KSUBC:TC41213_AT Proliferation-associated 2G4 (Pa2g4), mRNA mm
RG-U34B:RC_AA963703_AT proliferation-associated 2G4, 38kDa rn
RAE230A:1388353_AT proliferation-associated 2G4, 38kDa rn
RAT230_2:1388353_AT proliferation-associated 2G4, 38kDa rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8235 metalloexopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39984 Hypothetical protein W08E12.7 [Caenorhabditis elegans] ref|NP_500311.1| W08E12.7 [Caenorhabditis elegans] 0.0
blast CAE58485 Hypothetical protein CBG01629 [Caenorhabditis briggsae] 1.0E-174
blast CAE58486 Hypothetical protein CBG01630 [Caenorhabditis briggsae] 1.0E-167
Sequence
Target Sequence 
>C. ELEGANS:175056_AT
aagccgtagtctcagaactacgctcatttcactgcttttagtttctcttccctggtagac
aacaaaatcattctgttaaaatctcgatgttaaacatttccacctcttcccactattatc
ctttttctcttttcttccttgtgttcaattatcattattattttttgttggtttattctc
ggttatgtctgtgagccgtttaattcatctatgataggaatccggttgttgatttgggat
cacattcactttattgatgaaaaaagcctgatcatatacttgttctcagtttccctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCGTAGTCTCAGAACTACGCTC 149 149 13 Antisense
AACTACGCTCATTTCACTGCTTTTA 8 141 28 Antisense
TTTCACTGCTTTTAGTTTCTCTTCC 413 673 39 Antisense
TTAGTTTCTCTTCCCTGGTAGACAA 77 665 50 Antisense
CGATGTTAAACATTTCCACCTCTTC 187 249 97 Antisense
CTCTTTTCTTCCTTGTGTTCAATTA 112 231 139 Antisense
GTTGGTTTATTCTCGGTTATGTCTG 300 435 179 Antisense
GTCTGTGAGCCGTTTAATTCATCTA 705 471 199 Antisense
GATTTGGGATCACATTCACTTTATT 550 427 243 Antisense
AAAGCCTGATCATATACTTGTTCTC 500 125 275 Antisense
CATATACTTGTTCTCAGTTTCCCTT 25 215 285 Antisense
Sequence Source Affymetrix Proprietary Database