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[175054_at]

Description CEK116BXR_rc /REP_DB=TREMBL Accession /GB=D73245 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk116b10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 38      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 20      6grp_total > 27      4grp_total > 22      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 571
1 2 3 4 range
A 1229.7
(3)
P 		910.6
(-0.4)
P 		674.6
(-3)
P 		1171
(2.4)
P 		555
B 1233.3
(3)
P 		768.4
(-3)
P 		786
(-2.8)
P 		1215.2
(2.8)
P 		465
C 1245.7
(3)
P 		916.3
(-2.3)
P 		875.6
(-3)
P 		1180.5
(1.9)
P 		370
avr 1236.2
(3) 		865.1
(-1.9) 		778.7
(-3) 		1188.9
(2.4) 		458

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1180
1 2 3 4 5 6 range
A 1515.6
(3)
P 		1030.9
(-0.4)
P 		714.4
(-2.6)
P 		651.9
(-3)
P 		842.4
(-1.7)
P 		1051.6
(-0.2)
P 		864
B 1766.4
(3)
P 		991.3
(-1.6)
P 		807.1
(-2.7)
P 		862
(-2.3)
P 		751.9
(-3)
P 		1102.9
(-0.9)
P 		1015
C 1308.1
(3)
P 		982.5
(0.3)
P 		761.1
(-1.5)
P 		586
(-3)
P 		723.5
(-1.9)
P 		1042.3
(0.8)
P 		722
avr 1530
(3) 		1001.6
(-0.8) 		760.9
(-2.6) 		700
(-3) 		772.6
(-2.5) 		1065.6
(-0.4) 		830
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 447.7
(3)
P 		197.7
(-2.4)
P 		176.4
(-2.9)
P 		171.4
(-3)
P 		276
B 393.3
(3)
P 		189.8
(-2.8)
P 		182.1
(-3)
P 		259
(-0.8)
P 		211
C 412.4
(3)
P 		263.4
(-1.2)
P 		305.2
(-0)
P 		199
(-3)
P 		213
avr 417.8
(3) 		217
(-2.8) 		221.2
(-2.7) 		209.8
(-3) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 497
1 2 3 4 5 6 range
A 279.4
(0.5)
P 		366.6
(3)
P 		155.6
(-3)
P 		165.3
(-2.7)
P 		254.2
(-0.2)
P 		256
(-0.1)
P 		211
B 614.6
(3)
P 		329.9
(-1.1)
P 		196
(-3)
P 		228.3
(-2.5)
P 		305.5
(-1.4)
P 		411.3
(0.1)
P 		419
C 484.9
(3)
P 		299.8
(-0)
P 		193.7
(-1.8)
P 		117.9
(-3)
P 		234.1
(-1.1)
P 		348.9
(0.8)
P 		367
avr 459.6
(3) 		332.1
(0.4) 		181.8
(-2.8) 		170.5
(-3) 		264.6
(-1) 		338.7
(0.5) 		289
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22457
Sequence Type Exemplar sequence
Representative Public ID CEK116BXR NCBI
Target Description CEK116BXR_rc /REP_DB=TREMBL Accession /GB=D73245 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk116b10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075744(11), NM_001029627(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075744 NCBI Caenorhabditis elegans Suppressor of LIneage defect family member (sli-1) (sli-1) mRNA, complete cds. 11/11 A 
NM_001029627 NCBI Caenorhabditis elegans Suppressor of LIneage defect family member (sli-1) (sli-1) mRNA, complete cds. 11/11 None
M02A10.3a ENSEMBL cdna:known chromosome:CEL140:X:720322:725956:-1 gene:M02A10.3 11/11 A 
M02A10.3c ENSEMBL cdna:known chromosome:CEL140:X:720344:725892:-1 gene:M02A10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180419 3 2 NM_001029626 192367_at (11)
NM_001029627 175054_at (11)
NM_075744 175054_at (11), 192367_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:720331-720690(-) 100.0 100.0
Public Domain and Genome References
Ensembl M02A10.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84546 Suppressor of lineage defect protein 1, isoform a [Caenorhabditis elegans] emb|CAA61507.1| sli-1 [Caenorhabditis elegans] ref|NP_508145.2| Suppressor of LIneage defect family member (sli-1) [Caenorhabditis elegans] 0.0
blast AAK84547 Suppressor of lineage defect protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024797.1| Suppressor of LIneage defect family member (sli-1) [Caenorhabditis elegans] 0.0
blast AAT92069 Suppressor of lineage defect protein 1, isoform c [Caenorhabditis elegans] ref|NP_001024798.1| Suppressor of LIneage defect family member (sli-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 1.3E-97
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 1.6E-68
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.6E-15
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 4.4E-67
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 1.1E-94
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 1.6E-68
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.6E-15
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 4.4E-67
Sequence
Target Sequence 
>C. ELEGANS:175054_AT
ttcattcccccacttatcatagaactattcttccacaacaacatattgccgtgactagaa
ctggtaacactacatcattctttgttaaaacgttattatatctctatttctttttcgcct
actcctttccgtttttttttcaaattttgtcaattttcctacagcgttctgactcctatt
ggtaagcaatcatgtcatatcttgttaaattttcatgttaatttcttactctcgctgtcc
cagattttacggagttttcaggaaacgtttgattttgttctattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATTCCCCCACTTATCATAGAAC 449 689 16 Antisense
AGAACTATTCTTCCACAACAACATA 561 73 36 Antisense
CTTCCACAACAACATATTGCCGTGA 260 219 45 Antisense
TATTGCCGTGACTAGAACTGGTAAC 151 661 59 Antisense
GAACTGGTAACACTACATCATTCTT 247 349 73 Antisense
AACGTTATTATATCTCTATTTCTTT 19 145 104 Antisense
TGTCAATTTTCCTACAGCGTTCTGA 297 559 163 Antisense
AGCGTTCTGACTCCTATTGGTAAGC 482 81 178 Antisense
GTAAGCAATCATGTCATATCTTGTT 288 463 197 Antisense
TCTCGCTGTCCCAGATTTTACGGAG 306 611 245 Antisense
GAAACGTTTGATTTTGTTCTATTCT 682 357 277 Antisense
Sequence Source Affymetrix Proprietary Database