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[175053_at]

Description CEK028CYR_rc /REP_DB=TREMBL Accession /GB=D33249 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28c11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 40      6grp_total > 17      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 662
1 2 3 4 range
A 900.9
(3)
P 		564
(-0.2)
P 		422.3
(-1.6)
P 		277.9
(-3)
P 		623
B 939.9
(3)
P 		589.2
(-0.6)
P 		464.4
(-1.9)
P 		351.9
(-3)
P 		588
C 840.4
(3)
P 		550.7
(-0.5)
P 		415.6
(-2.1)
P 		337.7
(-3)
P 		503
avr 893.7
(3) 		568
(-0.4) 		434.1
(-1.8) 		322.5
(-3) 		571

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 628
1 2 3 4 5 6 range
A 939.3
(3)
P 		700
(0.3)
P 		402.6
(-3)
P 		449.7
(-2.5)
P 		504.7
(-1.9)
P 		414.5
(-2.9)
P 		537
B 882.1
(3)
P 		701
(0.9)
P 		384.4
(-2.7)
P 		505.1
(-1.4)
P 		362.7
(-3)
P 		465.4
(-1.8)
P 		519
C 990.2
(3)
P 		645.3
(-0.8)
P 		532.9
(-2)
P 		519.1
(-2.1)
P 		540.3
(-1.9)
P 		439
(-3)
P 		551
avr 937.2
(3) 		682.1
(-0.1) 		440
(-3) 		491.3
(-2.4) 		469.2
(-2.6) 		439.6
(-3) 		498
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 328
(3)
P 		122.4
(-1.3)
P 		110.4
(-1.5)
P 		40.7
(-3)
P 		287
B 299.7
(3)
P 		145.5
(-1.1)
P 		107.6
(-2.1)
P 		75
(-3)
P 		225
C 278.2
(3)
P 		158.3
(-0.3)
P 		144.9
(-0.6)
P 		56.9
(-3)
P 		221
avr 302
(3) 		142.1
(-0.9) 		121
(-1.4) 		57.5
(-3) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 173.1
(0.2)
P 		248.9
(3)
P 		87.7
(-3)
P 		114.1
(-2)
P 		152.3
(-0.6)
P 		100.9
(-2.5)
P 		161
B 306.9
(3)
P 		233.3
(0.9)
P 		93.3
(-3)
P 		133.8
(-1.9)
P 		147.4
(-1.5)
P 		173.5
(-0.7)
P 		214
C 367
(3)
P 		196.9
(-0.9)
P 		135.6
(-2.3)
P 		104.4
(-3)
P 		174.8
(-1.4)
P 		146.9
(-2)
P 		263
avr 282.3
(3) 		226.4
(1.1) 		105.5
(-3) 		117.4
(-2.6) 		158.2
(-1.2) 		140.4
(-1.8) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175053_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22103
Sequence Type Exemplar sequence
Representative Public ID CEK028CYR NCBI
Target Description CEK028CYR_rc /REP_DB=TREMBL Accession /GB=D33249 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk28c11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077137(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077137 NCBI Caenorhabditis elegans Apical Junction Molecule family member (ajm-1) (ajm-1) mRNA, complete cds. 9/11 A B 
C25A11.4b ENSEMBL cdna:known chromosome:CEL140:X:9098280:9108525:1 gene:C25A11.4 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181148 4 1 NM_077135 188324_at (11), 189079_s_at (11)
NM_077136 188324_at (11), 194256_x_at (11)
NM_077137 175053_at (9)
NM_171966 188324_at (9), 189079_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9108061-9108450(+) 100.0 100.0
Public Domain and Genome References
Ensembl C25A11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39186 Apical junction molecule protein 1, isoform b [Caenorhabditis elegans] ref|NP_509538.1| Apical Junction Molecule family member (ajm-1) [Caenorhabditis elegans] 1.0E-114
blast AAK39188 Apical junction molecule protein 1, isoform c [Caenorhabditis elegans] ref|NP_509537.1| Apical Junction Molecule family member (ajm-1) [Caenorhabditis elegans] 1.0E-102
blast AAK39187 Apical junction molecule protein 1, isoform a [Caenorhabditis elegans] ref|NP_509536.1| Apical Junction Molecule family member (ajm-1) [Caenorhabditis elegans] 1.0E-102
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509538.1 1 918-940
C25A11.4b 1 918-940
Sequence
Target Sequence 
>C. ELEGANS:175053_AT
atgcagccagttttttctgttctccttttccactttttggaataatctaccctttagaaa
cagtacaaccaacccctttatcttcaaacttagtttcatttagacaaaaatcctaccctt
ccagaaaagtgtgcgcttgcctgtgtgagagtgtgtgtgccttctgttttcttattcatt
cttttctcttccactgccctcttgatatcaagatatcaataatttacatcatcatcttcg
ttatccgcccctttgaaatcgtttcattttggaattattctccatgtattttctgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAGCCAGTTTTTTCTGTTCTCC 548 43 53 Antisense
TAATCTACCCTTTAGAAACAGTACA 574 635 95 Antisense
TAGACAAAAATCCTACCCTTCCAGA 30 653 153 Antisense
TACCCTTCCAGAAAAGTGTGCGCTT 563 647 166 Antisense
TGCGCTTGCCTGTGTGAGAGTGTGT 338 583 184 Antisense
TGTGTGAGAGTGTGTGTGCCTTCTG 586 555 194 Antisense
TCCACTGCCCTCTTGATATCAAGAT 249 589 242 Antisense
CAATAATTTACATCATCATCTTCGT 312 181 269 Antisense
TCCGCCCCTTTGAAATCGTTTCATT 628 593 296 Antisense
ATCGTTTCATTTTGGAATTATTCTC 392 35 310 Antisense
ATTATTCTCCATGTATTTTCTGATT 102 15 326 Antisense
Sequence Source Affymetrix Proprietary Database