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[175052_at]

Description CEK133E3R_rc /REP_DB=TREMBL Accession /GB=D65248 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk133e3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 37      4grp_high_8_8 > 02      6grp_highest_nonorm > 68      6grp_total > 49      4grp_total > 06      6grp_highest_sub > Cu      6grp_cgc > 19      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3579
1 2 3 4 range
A 3181.6
(0.2)
P 		1263.2
(-3)
P 		2003.9
(-1.8)
P 		4841.8
(3)
P 		3579
B 3830.3
(2.1)
P 		1876.2
(-3)
P 		2026.4
(-2.6)
P 		4156.4
(3)
P 		2280
C 3089.9
(0.8)
P 		1658.9
(-3)
P 		2165.1
(-1.7)
P 		3910.1
(3)
P 		2251
avr 3367.3
(0.9) 		1599.4
(-3) 		2065.1
(-2) 		4302.8
(3) 		2703

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1367
1 2 3 4 5 6 range
A 2436
(2.8)
P 		2168.1
(1.5)
P 		1251
(-3)
P 		1749
(-0.6)
P 		2484.7
(3)
P 		2233.4
(1.8)
P 		1234
B 1718.8
(0)
P 		1866.8
(0.7)
P 		1118
(-3)
P 		2153.7
(2.2)
P 		1991.7
(1.4)
P 		2316.9
(3)
P 		1199
C 1767.6
(-1.3)
P 		1914.1
(-0.3)
P 		1864.5
(-0.6)
P 		1497.9
(-3)
P 		1925.6
(-0.2)
P 		2429.3
(3)
P 		931
avr 1974.1
(0.7) 		1983
(0.7) 		1411.2
(-3) 		1800.2
(-0.5) 		2134
(1.7) 		2326.5
(3) 		915
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 947
1 2 3 4 range
A 1158.4
(3)
P 		274.2
(-3)
P 		523.9
(-1.3)
P 		708.7
(-0.1)
P 		884
B 1221.4
(3)
P 		463.4
(-3)
P 		469.6
(-3)
P 		885.7
(0.3)
P 		758
C 1022.8
(3)
P 		476.9
(-3)
P 		754.6
(0.1)
P 		659.3
(-1)
P 		546
avr 1134.2
(3) 		404.8
(-3) 		582.7
(-1.5) 		751.2
(-0.2) 		729

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 592
1 2 3 4 5 6 range
A 449.1
(-0.9)
P 		771.1
(3)
P 		272.4
(-3)
P 		443.6
(-0.9)
P 		749.8
(2.7)
P 		543.8
(0.3)
P 		499
B 598.1
(0.3)
P 		621.4
(0.5)
P 		271.5
(-3)
P 		570.5
(0)
P 		809.2
(2.4)
P 		863.9
(3)
P 		592
C 655.2
(1.1)
P 		584
(0.3)
P 		474.5
(-1)
P 		301.2
(-3)
P 		623.1
(0.8)
P 		813.2
(3)
P 		512
avr 567.5
(0.4) 		658.8
(1.8) 		339.5
(-3) 		438.4
(-1.5) 		727.4
(2.8) 		740.3
(3) 		401
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175052_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20260
Sequence Type Exemplar sequence
Representative Public ID CEK133E3R NCBI
Target Description CEK133E3R_rc /REP_DB=TREMBL Accession /GB=D65248 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk133e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182025(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182025 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-44) (pqn-44) mRNA, complete cds. 11/11 None
F55A12.9d.4 ENSEMBL cdna:known chromosome:CEL140:I:5372858:5377467:-1 gene:F55A12.9 11/11 A 
F55A12.9d.5 ENSEMBL cdna:known chromosome:CEL140:I:5372858:5384511:-1 gene:F55A12.9 11/11 A 
F55A12.9d.1 ENSEMBL cdna:known chromosome:CEL140:I:5372858:5377484:-1 gene:F55A12.9 11/11 A 
F55A12.9d.2 ENSEMBL cdna:known chromosome:CEL140:I:5372858:5376344:-1 gene:F55A12.9 11/11 A 
F55A12.9d.3 ENSEMBL cdna:known chromosome:CEL140:I:5372858:5379792:-1 gene:F55A12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172187 4 1 NM_182025 175052_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5372905-5373208(-) 100.0 100.0
Public Domain and Genome References
Ensembl F55A12.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54127 Prion-like-(q/n-rich)-domain-bearing protein protein 44, isoform a [Caenorhabditis elegans] ref|NP_491581.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-44) [Caenorhabditis elegans] 0.0
blast AAK68879 Prion-like-(q/n-rich)-domain-bearing protein protein 44, isoform b [Caenorhabditis elegans] ref|NP_491580.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-44) [Caenorhabditis elegans] 0.0
blast AAM45365 Prion-like-(q/n-rich)-domain-bearing protein protein 44, isoform c [Caenorhabditis elegans] ref|NP_740852.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-44) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175052_AT
ttccctcttcaactcaaactttttgcctactggtgcaatttatttcattttgaagtttag
cttccttctctcctcgaccaaaattgttttgtaaattaatcttttatttcggaaaaaaac
gtgcttatcacaccggctggttcggtggatatcaagctcatccgccacacatcattcaca
tgtttcatttgtttctctcatttgtcctctctggttctatttttcgctagtttttaacgg
gatcctcaaacacact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCTCTTCAACTCAAACTTTTTG 327 697 30 Antisense
AAACTTTTTGCCTACTGGTGCAATT 37 129 45 Antisense
TTTGAAGTTTAGCTTCCTTCTCTCC 636 667 78 Antisense
CTTCTCTCCTCGACCAAAATTGTTT 174 219 94 Antisense
AAAAACGTGCTTATCACACCGGCTG 650 129 144 Antisense
ATCACACCGGCTGGTTCGGTGGATA 691 27 156 Antisense
GTGGATATCAAGCTCATCCGCCACA 192 489 174 Antisense
CCGCCACACATCATTCACATGTTTC 183 263 191 Antisense
TTCATTTGTTTCTCTCATTTGTCCT 487 689 213 Antisense
CTCTCTGGTTCTATTTTTCGCTAGT 165 229 236 Antisense
TTTTAACGGGATCCTCAAACACACT 574 675 261 Antisense
Sequence Source Affymetrix Proprietary Database